Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0915 ATGGCCGGCTTGGTCACTGGTTCCCAACACTATTCCCACAGTGCTGATGAGAGTCTTCGTGGACCTCCACTATCGTCGAAAATATGTCGAGTTTGCAGTGACGAAATAGGACTAAAACAAGATGGGAAAGTATTTGTGGCATGTCTTGTGTGCAATTTCCCTGTTTGTCGACCTTGTTATGAGTATGAAAGGAGCGAAGGCAATAGGTGTTGTCCCCAATGCAACACTCGCTATAAGCGTCACAAAGGCTCACCCAGAGTGATCGGCGACGAGGAAGAAGGTGACGATGCCGATGATTTTGACGATGAGTTCCCCATGAAACACCACAACAATGACGAATTTCAAACAAAGCAGCCTAATCATTCGGAAAACGATAACTACAATGAGCAGAATTGGCATAAAAATGTTCAGAATTCGTTCTCAGTTGCTGGAAGTGTGAATGGGAAGGATATGGAAGGGGAAAAAGAGGGTTATGGAAGTGTAGAATGGAAGGAGAGAATTGATAAGTGGAAAGTGAGGCAAGAGAAGAGAGGTTTGGGAAACAAAGAAGATGGAAGTAACAATGATCAAGAAGAAGATGACTACTTATTGGCAGAAGCCCGGCAGCCGCTATGGCGGAAACTTCCAATATCGTCAAGCAAAATCAGTCCATATCGCATCGTCATTGTCCTCCGCCTCATAATTCTTGCATTCTTCTTCCGATTTCGGATCCTTACTCCGGCCTACGACGCCTTCCCCTTGTGGCTGATCTCCGTCATCTGCGAAATCTGGTTCGGCTTCTCCTGGATTCTCGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTAGATCGCCTCTCCATGCGCTTCGAGCGCGACGGCGAGCCCAACCGCCTCTCACCGATCGACTTCTTCGTCAGCACGGTGGACCCTCTGAAAGAGCCGCCGATCATAACCGCCAACACCGTCCTTTCCATCCTCTCGGTCGACTATCCGGTGGAGAAGGTCAGCTGCTACGTATCGGACGATGGAGCGTCGATGCTGCTGTTCGATACGCTGGCGGAGACTGCGGAGTTTGCTCGGAGATGGGTGCCGTTTTGCAAGAAGTTCAGCATCGAACCTAGGGCTCCGGAGTTCTATTTCTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGGCTAGCTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGACGTGGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAACACCACAAGAAAGCTGGTGCTATGAATGCTCTTGTTCGAGTCTCTGCAGTCCTCACAAATGCACCGTTCATCTTAAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTACGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATGTTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCACGACAGATATGCTAATCGGAATATCGTGTTCTTTGATATCAACATGCGAGGGCTAGATGGAATCCAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCACCAGTCTCTGAGAAAAGGCCAAAGATGACATGCGATTGTTGGCCTTCCTGGTGTTGCTGCTGCTGCGGTGGTTCAAGGAAATCAAAATCCAAGAGGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCAAGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGCGCCGGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTCGAAGGTTATGATGAGTTGGAGAAGTCATCACTCATGTCGCAAAAGAATTTCGAGAAAAGATTCGGACAGTCACCAGTTTTCATCGCTTCTACCCTTAAGGAAGATGGAGGTCTTCCAGAAGGGACTAACAGCACTTCACTTGTTAAAGAAGCCATCCATGTGATTAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTACGGTTCTGTCACTGAGGATATTTTGACTGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTGTACTGCATGCCCCAGAGACCAGCTTTCAAGGGATCGGCTCCAATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCTTTAGGTTCTGTTGAAATTTTCCTCAGCCGCCACTGCCCGCTATGGTATGCTTATGGAGGAAAGCTAAAATGGCTTGAAAGGCTTGCCTACATCAACACTATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCAGCTGTCTGTCTTCTCACTGGAAAATTCATTATCCCCACCTTGACGAACTTGGCTAGCGTCTGGTTCATGGCGTTGTTTATTTCCATCATTGCAACGGCCGTGCTGGAGCTTCGATGGAGTGAAGTGAGTATTGAAGACTTATGGCGTAATGAGCAATTCTGGGTGATTGGTGGTGTCTCCGCACATCTTTTTGCCGTGTTCCAAGGCCTTCTCAAGGTCCTTGGCGGAGTAGACACCAACTTCACAGTTACAGCGAAAGCAGCTGAAGACACCGAGTTTGGAGAGCTCTATCTTTTCAAGTGGACGACACTCCTCATCCCGCCGACCACTCTCATAATCTTGAACATGGTGGGAGTGGTTGCTGGAGTTTCAGATGCAATCAACAATGGCTACGGTTCATGGGGTCCTCTGTTTGGAAAGCTCTTTTTTGCTTTCTGGGTAATTGTGCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGACAAAACAGGACCCCCACCATCGTCGTCCTTTGGTCCGTGCTTCTTGCTTCCATATTTTCACTGGTTTGGGTGCGAATTGATCCCTTCTTGCCCAAGCAAACAGGTCCTGTCCTCAAACAATGTGGAGTTGATTGCTAG 3120 47.4 MAGLVTGSQHYSHSADESLRGPPLSSKICRVCSDEIGLKQDGKVFVACLVCNFPVCRPCYEYERSEGNRCCPQCNTRYKRHKGSPRVIGDEEEGDDADDFDDEFPMKHHNNDEFQTKQPNHSENDNYNEQNWHKNVQNSFSVAGSVNGKDMEGEKEGYGSVEWKERIDKWKVRQEKRGLGNKEDGSNNDQEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLIILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFERDGEPNRLSPIDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSIEPRAPEFYFSQKMDYLKDKVLASFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKRKGERGLLGGLFKKKKMMGKSYVRKAPGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2565054 2572012 + CrPI670011_06g009150.1 Cre06g0915 500377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0915 1039 CDD mRING-HC-C4C4_CesA 27 77 - -
Cre06g0915 1039 Coils Coil 396 416 - -
Cre06g0915 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 102 IPR013083 -
Cre06g0915 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 210 1008 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cre06g0915 1039 SUPERFAMILY RING/U-box 23 100 - -
Cre06g0915 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 311 852 IPR029044 -
Cre06g0915 1039 MobiDBLite consensus disorder prediction 82 101 - -
Cre06g0915 1039 Pfam Cellulose synthase 298 1032 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cre06g0915 1039 Pfam Zinc-binding RING-finger 24 95 IPR027934 -
Cre06g0915 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 590 IPR029044 -
Cre06g0915 1039 FunFam Cellulose synthase 415 589 - -
Cre06g0915 1039 MobiDBLite consensus disorder prediction 1 22 - -
Cre06g0915 1039 MobiDBLite consensus disorder prediction 106 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0973 Cre-Chr3:8530318 Cre06g0915 Cre-Chr6:2565054 0.00E+00 dispersed
Cre06g0915 Cre-Chr6:2565054 Cre11g1562 Cre-Chr11:25292509 0.00E+00 dispersed
Cre06g0915 Cre-Chr6:2565054 Cre02g0541 Cre-Chr2:2525736 5.60E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0915 K10999 - csv:101205733 1964.12