Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0932 ATGACGCAGCCACAGCTGCCCATCAGCATTAGTAGAAACTATAATGAAACCGATAATGATCAGTTGGTGATTGAGGTGAAGGAAAATCTCAATAAACTGGTGGAATCAGTACTTGCTATGGACGAGTATGGATCATTAGGACAAATCGTCAAACCTTCGATCTACAGAATACCAAAATTCATGAGAGAAGTTCATCCGAAAGCGTTCGAGCCACAGTTGGTGTCGTTTGGGCCATACCACCATGGGAATCCACAATGTGCTTCAATGGAACTGGAAAAACAGAAAGCGTTTCGCCGTTTCAAAACCGAGTACCCAGAGATGTTAGAGTCGATTGTGAAGACTGTGTCTAACAATTTGGAAAATCTGTTGGGAGCATACGATAAGCTTGAGGATAAATGGACGAAACATCCTGCCAAGTTCTTGGAGGTGTTGATTGTGGATGGCTGTTTCATGCTGAGTTTCTTCAAGAAATGTCCCCCCTCCCTAAGTTCTATGAGTTGGGATATAAAGCGGGACATGCTTCTGCTTGAGAATCAGCTACCCATGCAGCTTCTTGAAGATTTGCATTCCATTTTACCAAACATGGATGGAAGACTGACATGGTTTATATGCAAGTCAATGTGCATCAAATTAGAGGAAGCAGTATCAATGGGAGGAGACTTGCACATTTTGGATATGTATAGAATGTCACTATTGGGTACTCCGATAGAGAATAAGGATGGTAGTATGGAGAGAAAAACGAAGAAATCCGGGCCAGAATATCAAGTGATTCGACATGCAACACAGCTTCGTGACGCGGGGATAGATTTCCAGCAAAGCCGTACAAAGAGCCTTACTGACGTGAGTTTTGACTCCAAAAAAGGGGTGCTGAAAATTCCAAAATTAGTGGTGGACGATGATAGTGAAGCCAATTTATTAAATGTGATGGCATTTGAGAAACTACATGAGGAGGCTGGAAGCGAAGTCACATCTTTCGTAGTATTGATGAACAATTTGATAGACGTGGATGAAGATGTGGCTTTGCTGTCTTCTAAAAATATAATATCTAACGCGCTTGGGGATGATCAAAGTGCGGCGGAGTTGTTTGGTTCGCTTGGGAAAGGGGCGGCTATGGATTTGGAAAGCCACATTACAGAGGTGCATCACCAGGTGAATCTGCATTGCCGCCGGCCATGGAATGAATGGTGTGCAAGTCTCAAACATAATTACTTTCATAACCCATGGGCCATTATCTCACTCGTTGCCGCTATTCTCGGTTTCGCCATCCTTATTGTTCAAGCCGTCTACCAAATTGTCTCGATATTAAGAGCCGCACACGATGTGATTCTCATTCTCATATCACTGTTTCTTGTTGTCTCTCCCGAGCATAATCGGTGCCCCCCTCCTCAAATTGCTTACCAACTTCAACTTCCCAACTGCGATCTTCAATCTCTCTCAGATGCTAATGACTCTTCTTTGGGGGATTTAGTCTGGTCTTCTGCAAAAGAAGAGGGCGATCTCCTTATTGAGCACAGGCCCCAGGAAGATTCCGCCGCCGCCACACCTGTCGTTCACGACGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGGGCTATAGGCCATTCTGATCCTGCAAAACTGAAGGATACTGCACAGGATGTGAAACGATTGTCTCCAAGTGAGATAAAGAAGCGTCAAGAAGAAATTAAGGACCTAATAGAGGAGTTGAAGGTGCCATCAGATGCAAAGCTGATGCAAATTGCGATAGATGACTTGAAAAATTCCTCTCTATCATTGGAAGATCGCCATCGGGCATTACAGGAGCTTTTAGTACTCGTTGAGCCAATAGACAATGCAAATGATTTGGACAAACTTGGGGGCCTTGCTGTGCTTATTCATGAGCTTAATCATTTCGATCCTGATATTAGGAAAGTTGCAGCGTGGATTCTCGGAAAAGCAAGTCAGAATAACCCTATTGTTCAAAAGCAGGTATTGGAACTCGGGGCACTAGCAAAATTAGTAACGATGGTAAAATCTGATTTTGTAGAAGAAGCCATCAAGGCATTGTATGCTATTTCATCGTTGGTTCAAAATAATTTATCTGGCCAGGAATTATTCTATGCCGAAGCTGGAGAAACTATGCTTCAGGATATTTTAAGCAACTCGAGCATGGATATCAGATTGCAAAAGAAAGCTGTTTTTCTTGCAAGTGATTTGGCTGTGACACAACTAGAAAAAACAGATGAAGCTGAAAGGCCATTTTTTGGAGATCGCCTTTTCTTGAAGTCTGTGGTTGATCTCATCCATTCCACAGACATTGATCTCCAGGAGAAGGCCCTCATTGCTCTAAAGAACCTCCTGCTTTTGAGAACAACGAAAGCTCAAGTTTTAAGAGAATTTTGTGGGTTGGATGTTGCTTTGGAGAGGATGAGGGTGAAGCTGGAGGTATTAAAGGAAGGGGAAGATCACCGAGATTATGCAATGGATGTGGAAGATCTACGAAGCCAAGTGGAGTTACTTTTCCTTGAAAAGCTGGGAAAGTAG 2541 43.33 MTQPQLPISISRNYNETDNDQLVIEVKENLNKLVESVLAMDEYGSLGQIVKPSIYRIPKFMREVHPKAFEPQLVSFGPYHHGNPQCASMELEKQKAFRRFKTEYPEMLESIVKTVSNNLENLLGAYDKLEDKWTKHPAKFLEVLIVDGCFMLSFFKKCPPSLSSMSWDIKRDMLLLENQLPMQLLEDLHSILPNMDGRLTWFICKSMCIKLEEAVSMGGDLHILDMYRMSLLGTPIENKDGSMERKTKKSGPEYQVIRHATQLRDAGIDFQQSRTKSLTDVSFDSKKGVLKIPKLVVDDDSEANLLNVMAFEKLHEEAGSEVTSFVVLMNNLIDVDEDVALLSSKNIISNALGDDQSAAELFGSLGKGAAMDLESHITEVHHQVNLHCRRPWNEWCASLKHNYFHNPWAIISLVAAILGFAILIVQAVYQIVSILRAAHDVILILISLFLVVSPEHNRCPPPQIAYQLQLPNCDLQSLSDANDSSLGDLVWSSAKEEGDLLIEHRPQEDSAAATPVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPSEIKKRQEEIKDLIEELKVPSDAKLMQIAIDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLIHELNHFDPDIRKVAAWILGKASQNNPIVQKQVLELGALAKLVTMVKSDFVEEAIKALYAISSLVQNNLSGQELFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLAVTQLEKTDEAERPFFGDRLFLKSVVDLIHSTDIDLQEKALIALKNLLLLRTTKAQVLREFCGLDVALERMRVKLEVLKEGEDHRDYAMDVEDLRSQVELLFLEKLGK 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2725403 2735751 - CrPI670011_06g009320.1 Cre06g0932 500394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0932 846 ProSiteProfiles GTF2I-like repeat profile. 823 846 IPR004212 -
Cre06g0932 846 SUPERFAMILY ARM repeat 569 800 IPR016024 -
Cre06g0932 846 Coils Coil 588 608 - -
Cre06g0932 846 Pfam Nucleotide exchange factor Fes1 530 621 IPR013918 -
Cre06g0932 846 Coils Coil 112 132 - -
Cre06g0932 846 Gene3D - 563 840 IPR011989 -
Cre06g0932 846 PANTHER BNAC04G53230D PROTEIN 51 435 - -
Cre06g0932 846 Pfam Plant protein of unknown function 54 420 IPR004158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0932 K09562 - - csv:105434386 642.114
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1328 Cre-Chr4:32096980 Cre06g0932 Cre-Chr6:2725403 4.50E-52 dispersed
Cre06g0932 Cre-Chr6:2725403 Cre08g1259 Cre-Chr8:25802259 4.80E-37 dispersed
Cre06g0932 Cre-Chr6:2725403 Cre06g0933 Cre-Chr6:2746032 9.90E-99 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1387 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00150 Cam06g0064 Cec06g0166 Cco06g0160 Clacu06g0161 Cmu06g0158 Cre06g0932 . . . . . . Chy11g01840 Cme11g02376 . . . . . . . . Sed09g0351 . . . . . . Cpe17g00949 . Bhi12g02379 Tan06g1430 Cmetu11g0377 . Hepe03g1179 . . . . . . . . . Lsi09g01778 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014136 1 1 0 1 1 1 1 0 0 1 0 0 0 1 1 1 0 1 0 1 1 1 1 1 1 0 1 3 1 1 23