Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0938 ATGCCTTTTATCTTCCTCTTCTTTTCCTCTTCCTTGCTTCTTCTTCATTTTTTTTTTTTTTTTCTAGAAAAAGAAAAATTATTACACACACATATATATACAGTCCTTGTGGATCGGCGGCATGGAAAGCGAGCACTTCCTTGGGAAGCACCGGAGGAGAAAGAAAGAGATCAAAATAATGAATTCCCTTCTTCTTGGTCCCAATCCAACTTCAATTATTCCCCCAATTTCAATCCACAAACACTAACTCAACTCCCTCAATCCGCTCCTCTTCAAAATCAAGAAACAGAAAGTGGGAGGAAGCGTCATTATAGAGGCGTAAGACAAAGACCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGAACTTTCGACACTGCCGAGGCTGCTGCCATTGCTTATGATAACGCCGCTTTGAGATTTAAAGGAACCAAAGCCAAGCTTAATTTCCCTGAACGAGTTCAAGCCAATCCTTCTGACTTTGGCTTTCTTCCCTCCGCCGCCTCCACCGCTGCTTCTTCTGCTGCTCCACCTCCCCAAGCCGCCGTGGCTTCATTTTCATCTCCTTCTCTTTCTCTTCCGCCGCCGTTGTCGGAGGAAGAAGCTTTCCCTGGACTTCATCAGTACGCTCAACTTCTCTCTAGCACCGACGCTGATTTCCCTTATTATTCTTCCACTCTTCTTCTCAACCAACAACAAACCCATTACCCTTTTTCTTCTTCTTCTTCTACACAACCACACCAACAAGATCAGGATCACTACGGCAAAGATTTCGGCACCGGTGGCTCAACCAATTAG 825 45.58 MPFIFLFFSSSLLLLHFFFFFLEKEKLLHTHIYTVLVDRRHGKRALPWEAPEEKERDQNNEFPSSWSQSNFNYSPNFNPQTLTQLPQSAPLQNQETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPSDFGFLPSAASTAASSAAPPPQAAVASFSSPSLSLPPPLSEEEAFPGLHQYAQLLSSTDADFPYYSSTLLLNQQQTHYPFSSSSSTQPHQQDQDHYGKDFGTGGSTN 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2771490 2774392 - CrPI670011_06g009380.1 Cre06g0938 500400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0938 274 MobiDBLite consensus disorder prediction 179 207 - -
Cre06g0938 274 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g0938 274 MobiDBLite consensus disorder prediction 82 105 - -
Cre06g0938 274 PANTHER DNA-BINDING DOMAIN 67 247 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cre06g0938 274 MobiDBLite consensus disorder prediction 243 258 - -
Cre06g0938 274 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Cre06g0938 274 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677(InterPro)
Cre06g0938 274 Gene3D AP2/ERF domain 102 162 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g0938 274 CDD AP2 103 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g0938 274 SMART rav1_2 103 166 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g0938 274 MobiDBLite consensus disorder prediction 179 203 - -
Cre06g0938 274 Pfam AP2 domain 103 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g0938 274 MobiDBLite consensus disorder prediction 243 274 - -
Cre06g0938 274 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g0938 274 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0938 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1210 Cre-Chr4:30788602 Cre06g0938 Cre-Chr6:2771490 1.20E-26 dispersed
Cre06g0938 Cre-Chr6:2771490 Cre08g0658 Cre-Chr8:19541764 1.90E-27 dispersed
Cre06g2693 Cre-Chr6:34380285 Cre06g0938 Cre-Chr6:2771490 2.10E-30 transposed
Cre05g0527 Cre-Chr5:4680056 Cre06g0938 Cre-Chr6:2771490 1.80E-15 wgd
Cre06g0938 Cre-Chr6:2771490 Cre07g1559 Cre-Chr7:31000069 4.70E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1351 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00156 Cam06g0060 Cec06g0172 Cco06g0167 Clacu06g0166 Cmu06g0162 Cre06g0938 . . . . . . Chy11g01833 Cme11g02369 Blo02g00209 . . . Bpe14g00816 . . . Sed09g0340 . . . . . . . . Bhi12g02385 Tan06g1437 Cmetu11g1306 . Hepe03g1176 . . . . . . . . . Lsi09g01770 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53830 PF00847 AP2 1.10E-13 CL0081 Cre TF