Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0946 ATGAAATCTCCCGATATGGCGGCGGTTACTGATTCTCTTGAGCAGTCTTTCCGTAACTTCACCCTCAACCACCGTCTAGCCTCGGCTGCCCCTTCCTCCGCCGGAGTTCGGAGGTCTCCGTCGTCGTTTTCTTCTTCTTCTTCTTCTTCTTCCGACGACGATGACGAATCTCATCTTCCTCTTCAACATAATCGCTTCGACACAATCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCTTTCTGGGAACAATGCCTCGATTTGAAGACAGGGGAAGTCTACTACAGAAACTGCCGGACTGGAATGAGAGTAAAGGAAGATCCAAGGACAGTGGAAGCACACAGCCGAGATTTATACTCAGAAGACGAAGACGACGACGATGATGAGACCTCGTCGGATGGTGGAAGTGAGGAGTCGTGTTCTTCATCGTCATACGGTGGTAGTAGACAGCAATACCCGGCGGAAAACGTGGAGGATGTGCTGGTGGTGGCCGGATGCAAGAGATGCTTCATGTATTTCATGGTGCCGAAACAGGTCGAAGATTGCCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGCTCCGACGACAATAATGGCTTTCCATGA 612 50.65 MKSPDMAAVTDSLEQSFRNFTLNHRLASAAPSSAGVRRSPSSFSSSSSSSSDDDDESHLPLQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRTVEAHSRDLYSEDEDDDDDETSSDGGSEESCSSSSYGGSRQQYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSDDNNGFP 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2896384 2897587 - CrPI670011_06g009460.1 Cre06g0946 500408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0946 203 Gene3D - 77 114 - -
Cre06g0946 203 MobiDBLite consensus disorder prediction 107 151 - -
Cre06g0946 203 MobiDBLite consensus disorder prediction 28 50 - -
Cre06g0946 203 SUPERFAMILY WW domain 74 110 IPR036020 GO:0005515(InterPro)
Cre06g0946 203 MobiDBLite consensus disorder prediction 28 60 - -
Cre06g0946 203 PANTHER BOMB/KIRA PROTEINS 38 111 IPR051105 -
Cre06g0946 203 MobiDBLite consensus disorder prediction 119 134 - -
Cre06g0946 203 MobiDBLite consensus disorder prediction 135 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0946 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0946 Cre-Chr6:2896384 Cre07g1536 Cre-Chr7:30713897 2.60E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1329 Blo01g00160 . . Bda11g00377 Bpe13g00824 . . . . . . . . . . . . . . . . . . . Cla06g00164 Cam06g0049 Cec06g0183 Cco06g0176 Clacu06g0177 Cmu06g0172 Cre06g0946 . . . . . . Chy11g01824 Cme11g02359 . Blo12g00291 . Bda11g00377 . . . Bma06g01333 Sed07g0129 . . . . . . Cpe17g00937 . Bhi12g02398 Tan06g1452 Cmetu11g1288 . . . . . . . . . . . Lsi09g01761 . Chy07g01527 Cme07g01971
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001835 4 2 2 3 3 2 4 2 2 2 2 2 2 2 2 3 2 2 4 2 2 2 2 2 2 2 2 2 2 1 68