Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0954 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAATTGAATCCTGAAAGGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCACCGAACATTGCCAAACTGCCTTCTGGAATAGACAAGCTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCGAAGGATACGCCTCTTGTCAACATTTCTGCTCAAACTTTCACTTTCCGGGAGCTTGCAATTGCGACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGAGGATTTGGGCGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCAGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCTGATGGAGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGGTTAGAATACTTGCATGACAAGGCCAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGATGAGGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACTTATGGTTACTGTGCTCCCGAATACGCCATGACTGGACAATTGACCGTCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATCGATAGCACCCGACCCCAAGGGGAACAGAACCTTGTCACATGGGCACGCCCGTTTTTTAACGATCGCAGAAGATTCTCAAAATTGGCTGATCCACAATTGCAGGGGCGATATCCCATGCGAGGGCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCAGCCCGTCCGCTCATTGGAGATGTGGTTACCGCCCTGTCTTATTTAGCAAATCAATCCTATGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTGCTCAAAGAGGTTCTAGTGACCGGGATGAAAGACGGAACAGAGAGGAGAAAGGTGGAGGGGTGGTAAAGAATGAAGAAGGGGGAGCATCTGGACGAAGGTGGCCATTGGATGGTCCCGAGAAGGACGACTCCCCAAGGGAGACTGCTAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCAGTTGCTGAGGCCAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGCACACAAGGCAGTTTTGATGGCTCTAATGGATGA 1407 46.91 MGCFPCFDSREEEKLNPERESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPKDTPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAAAQRGSSDRDERRNREEKGGGVVKNEEGGASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3014227 3019266 - CrPI670011_06g009540.1 Cre06g0954 500416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0954 468 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g0954 468 SUPERFAMILY Protein kinase-like (PK-like) 65 359 IPR011009 -
Cre06g0954 468 Pfam Protein kinase domain 90 293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g0954 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g0954 468 MobiDBLite consensus disorder prediction 383 401 - -
Cre06g0954 468 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Cre06g0954 468 Gene3D Transferase(Phosphotransferase) domain 1 162 376 - -
Cre06g0954 468 MobiDBLite consensus disorder prediction 7 27 - -
Cre06g0954 468 MobiDBLite consensus disorder prediction 366 468 - -
Cre06g0954 468 MobiDBLite consensus disorder prediction 366 380 - -
Cre06g0954 468 FunFam Serine/threonine-protein kinase PBS1 58 161 - -
Cre06g0954 468 CDD STKc_IRAK 91 359 - -
Cre06g0954 468 MobiDBLite consensus disorder prediction 1 63 - -
Cre06g0954 468 MobiDBLite consensus disorder prediction 414 459 - -
Cre06g0954 468 PANTHER OS07G0668900 PROTEIN 45 382 - -
Cre06g0954 468 FunFam Serine/threonine-protein kinase PBS1 162 377 - -
Cre06g0954 468 Gene3D Phosphorylase Kinase; domain 1 47 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1825 Cre-Chr3:35163419 Cre06g0954 Cre-Chr6:3014227 1.00E-87 dispersed
Cre06g0954 Cre-Chr6:3014227 Cre10g2179 Cre-Chr10:36331013 2.30E-145 dispersed
Cre06g0954 Cre-Chr6:3014227 Cre05g0718 Cre-Chr5:6341480 7.00E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64190 PF00069 Pkinase 1.90E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0954 K13430 - csv:101219880 890.567