Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0959 ATGGCCGACGGCAAGTTCGATCTCCCTGACGATCTTCTCTCCTCCCGCCCTTCCGATCACTCCTGGACACCCAAAGCTTCTGGAGGGAATGACGAGGAGAAGGTGCTCTCGGCCTTCCTTGACGAGTCAAAAGACCCAGTGGCTTCAGAGAACAGCATACCTTTGTCCCCTCAATGGCTATATGCCAAACCAAGTGAAACTAAGATGGAAGTGCGTGCTCCAACACCAGTGTCCCTTGCTAACTCAACTGATCTCAATCAGAAAGAGGGTTGGCGCCCTGATGGGTCCGAGGACAAGAAAGATTGGAGGAAGAGTACTTCTGAAAATGAAAGTGGCCGCCGTTGGCGAGAGGAAGAGCGAGAAACTGGCTTACTTGGTGGTCGCCGCAGGAAAACTGAGCGCCGCATTGATAACATGTCAACTAAAGAGGCAATGGAGGGTAGAGTTCTGCCTAATTCGGATAGATGGCATGATGGTCGCACTTCTGGGCATGATAGTCGCACTTCTGGTCATGACGGCCGTACTTCTGGACATGATGGCCGTACTTCTGGGCATGATAGTCGTACTTCTAGTCATGATGCACGACGTGACAACAAATGGACGTTGAGATGGGGACCAGATGACAAAGAAAAGGAATCACGGATGGACAAGCGTTCAGATGCTGATAAGGAAGATGTTCGCAATGACAGTCAATCAGTGAGTGGCAATCGCCCTACTTCTGAGCGTGACTCTGAATCGCGTGATAAATGGAGGCCTCGCCATAGGATGGAAAGCCATTCTGTTGGCTCAACTTCCTCTCGCGCTGCACCTGGTTTTTCACTTGAGAGAGGGCGGGGAGATGGGGGGTCTAATTTAGGATTTACAATTGGAAGAGGAAGGGCAAATACTATTGGGAGATCATCTACTGGTCTCATTGGAGTTCCACACTTGGATAAGATTGAAAATGTTCCTGGGAAACCAAGATACTCATCTCCTGCTTTTTGTTACCCCAGGGGTAAGCTTCTTGACATATATAGGAGGCAGAAATCTAATCCATCGTTCTCAGCTCTGCCTGATGATATGGAAGAATTGCAGCCTGTGACTCAACCTTGTGTTGTAGAACCATTAGCTTTTGTTTCTCCGGATGCTGAAGAGGAGACTACCCTTAGTGACATATGGAAGGGGAAAATCACCAGTAGCGGGGTTGTTTACAATTCACATAAGAAGGGGAAGCTAGCTGAATCTGTTTTAGGAGATGTAGACTCCATAGATGGATATCAGACTGGGCTGGATTCAACTTTAGATTCTGAGAATATAGCAGCAACTCCGGTTGAAGATATTGCTAATGTGACTCATGAAGTTACTAATGATGAAGCATGCCAAGATGCTAGTGACAGGAGCATTTGGAGTCATCCTTCAATGAGAGATGTCCTAGATGGAAAATATGTCAGCCATAAGGAAGATGATAAAAGGTCTAGTGCCATTTCTACGTCAAACTCTGGTGGATTGGCCCACACAGTTTCTACAGTAGCCTCCCAACGTGGGATGGAGATTGGTGGTGGACACCCTGGTACTCAGCTAAATGTTGGTGTCAATGGGCGAGCAGATTCTGATCATAAAAAGCCTCATAACTTTGATGAAAATGAGTTTGCCAATTCGTTTGATGCCAGATCCAAGCTTTCTGATGATCCTAGCTCTATTTTCTTTATTCCCTTCTCTGAGCAAAATCCAAATAAAAGTTCTGATGTGAAATCTGAGGAGATGAGTTTGTTCTATCTTGATCCTCAAGGGGTTATACAGGGGCCTTTTATTGGGGCTGACATCATCTTGTGGTATGAACAAGGTTTCTTTGGGTTGGACCTGCCTGTTCGGTTGGCAGATGCCCCTGAGTCCCCATTTTGTGAGTTGGGGGAGGTTATGCCACATTTGAAAGTTAGAGAGGGAAGTGTTGATTGTGCTGATACGAAATCTCTTTCAGGCCAGTCTGGTGCCTCAGGAGGAATAATGGAGACCAATTTACCTTCTAAGCATCCAGCTCTTGATGTGAATGATGCATCCACAACAAATGAGGTTCATCGGTCACTTGCTGAGTTACATAGCCTCTCCCATCAACACATTTCATCTGGAATGTCTGAGACTGAAGCACCATTTCAATTGCATTCCAAGGGTCAAAGCTTTCATGATGTTGTTGCTCAGGATGAAGAAATTGTGTTTTCTGGAAGACCTGGAAACGATGGCTACCAATTTCCAAACTCTTCTGGGGTACTGCCTATGGTGAATTCTATCAGCCAACCTTCTCTTTTGAATGAGTTAACTGACCGCAGTGTGCCTGTTCAGAATGAAAATAAGTTGCACCCGTTTGGATTGCTGTGGTCTGAGCTGGAAGGTACAAATATGAAACCAATTGAAGTTACAAATTCGAAACATACCAAGTCAGCTAACATGCCTTCAAGCATGGTAAGAACCGCACCAGTTGGGAAGCCGGAAGCATCTCTTAATGCAGAGACTTGGCTTGATGTTTACAGAAGAAGTATGCATTCTGACCAGAGCATATACCAGGATGCGAGTGTTGCTCATTCGTTGCCACATATAGAACAGGAATCTAATAGGTTTGATTTGGCAGATCAACTCATGTCACATCAATATCATCAGGCACTTCAACAGCGGAATTTGTTGTCTCACTCTAATGAAGCTACTTTAGATCATCATATGCAACAGCAGAATCTTATTCACCAGCAGCAGCTGTTGGCTAATAGAAGTACACCCGATCTCGATCATTTCTTGAACTTGCAGATGCAACAGCAACAGCAACGTCAGCTGCAGTTACAGCATCAATTACAACAGCAGCAGTTGCAGCAGCAGCAAAAGCTTTTGCAGGAACAACATCAGTCTCAAGTCCAGCAGGTACTGCTTGAACAGTTGTTGCGTCGACAAATGCATGATTCAGGCCTTGGGCAGACACATATTGATCCAATTAGAGCCAATAATGCTCTTGATCAGGTGATGATGGAGCAGCGTCTTTTACATGAGCTACAGCAACAATCTCATCATCAACAAAGATCTGTTGATCCATCTTTTGAGCAGCTTTTCAAAGCGAAGTTTGGTCACTTGCCACCACACCAAGAACAAAGAGATTTGTCTGAATTAATATCTCGGGCTCAGCATGGACAGATACAATCATTGGATCATCAACTTCTCCAGCAGGAGATGCTACAGTCGAGACAGTTGTCTATGGCATTAAGGCAGAGGGCCAATATGGAGGACAAGAGACATGTTGGTGGTCCTATCTGGCCAGAGGATGAGGCTGATCAGCAGTTTTTCAGAGGACATGCTGGCACACAACGCTTACCGACTTCAGGGTTTGAATTATACCAGCATCAACAGAGGCAAGCTCATGCAGACCAGCTGAATCACCTCGAGCGCAATCTTTCCTTTCAAGATCGGTTTAGACTAGGTCTTTATGAGCCTGCTTCACTTCCACTCGAGAGATCAATATCCTATCCTGATGTTGCTCAGGGGATGAATCTGGATGTTGTTAATGCTATGGCTCGTGCTCGGGCTTTAGAATTGCAAGAATCTAGTGCACATAATCCACCTGGTGGTCAACTGGGGCAATATGCACCCGGTACCATTCCACAGAATCATCATCACTCTCTAGTCGGTAACCAGTTTCACGTTTCACATTTTGATGGAACTGAAGGCAGCTGGTCTGAGAAAAATGAGCGACTTGGAAATGATTGGATGGAGTCTCGCATTCAACAACTGCATATAAATGCTGAGCAACAGAAAAGGGAGTTGGAAGCTAAAATGGTTTCCGAGGATCCAACTTTATGGATGTCAGATGGGCTGAATGATGAGAAGTCAAAGCAGTTATTAATGGAACTCCTCAATCAGAAATCTGTTCATCAACCTACAGAATCCTTGGATGTAGGAAGTGGAGCATCTTTCAATAGAGCATCATCTGGCCTCTATTCTGGATCAGGCTCTCTTGAACAGTCGTTCATTCTTCATTCAGGCAAGGAAAGAGGTATGAACAACACATTGCCAGTGGGGTCTTACGGTTCTAATTCTTATGAACCACTGCAAGATGAGCATCCTGGCAGCTTGACCAGCAATGAGAAGGTCCCATACAGGTCGGATTCTGTCTCCGTTGTCAAGGGAGCATCAATTTTGGCTGGTCTTAAAGCCAATGGTGCAGTTAACAGCTCTAGTTCCGGCATGGCTGGCAACCTTTCTATGAATAGAGATGTCTTAGAGGTGGAGGGCAGGGCGCGAGGATTGAAAGGTGAGGGTTTGATGAAAACTCAAGCCTTTCAAATTCAAGAAAGCATGCTTGATCAAGTGGCATCTGCTGATCGTGGGGAATTTTCAATGGATACTCATACCCTTAGTCGGCATTCATCTCTTGGTTCTGCTGGCTTTCACAATGAAAAGATTGCCAATACGTTTCCTGAAGAGGTTGCTAAAGACCAGGTGACTATTCACAATAAAGATAACACTTTATTGAAACGCCCTCCCGTCTCACGCACTTCGGCATCCCAGGATGGTTTGTCTGTCCTGATTCCAGATCCGGTTGTCAGAGGGAAGAATTCAGATGGTGGAAGACCGGACCCGACTGGTATCTTGGTGAACCAAGAAAATATGGCAGCCATGAAGAAAGAGATGCGTTTCCGTCGCTCTTCTTCTTGTAGTGACAGTGACGTGTCGGAGACTTCTTTTATTGATATGCTGAAGAAGACAGCTCCACAAGAAGCCCATTTGACGACGGCAGGAGTTTCGGAGCCATCGGATGGAATGCAGGGAGGGAAAGGTGGGAAAAAGAAAGGGAAGAAGGGGAGACAGATAGATCCCGCTCTACTCGGTTTCAAAGTCACCAGCAACCGAATTATGATGGGTGAAATTCAACGCTTAGATGATTAG 4899 45.6 MADGKFDLPDDLLSSRPSDHSWTPKASGGNDEEKVLSAFLDESKDPVASENSIPLSPQWLYAKPSETKMEVRAPTPVSLANSTDLNQKEGWRPDGSEDKKDWRKSTSENESGRRWREEERETGLLGGRRRKTERRIDNMSTKEAMEGRVLPNSDRWHDGRTSGHDSRTSGHDGRTSGHDGRTSGHDSRTSSHDARRDNKWTLRWGPDDKEKESRMDKRSDADKEDVRNDSQSVSGNRPTSERDSESRDKWRPRHRMESHSVGSTSSRAAPGFSLERGRGDGGSNLGFTIGRGRANTIGRSSTGLIGVPHLDKIENVPGKPRYSSPAFCYPRGKLLDIYRRQKSNPSFSALPDDMEELQPVTQPCVVEPLAFVSPDAEEETTLSDIWKGKITSSGVVYNSHKKGKLAESVLGDVDSIDGYQTGLDSTLDSENIAATPVEDIANVTHEVTNDEACQDASDRSIWSHPSMRDVLDGKYVSHKEDDKRSSAISTSNSGGLAHTVSTVASQRGMEIGGGHPGTQLNVGVNGRADSDHKKPHNFDENEFANSFDARSKLSDDPSSIFFIPFSEQNPNKSSDVKSEEMSLFYLDPQGVIQGPFIGADIILWYEQGFFGLDLPVRLADAPESPFCELGEVMPHLKVREGSVDCADTKSLSGQSGASGGIMETNLPSKHPALDVNDASTTNEVHRSLAELHSLSHQHISSGMSETEAPFQLHSKGQSFHDVVAQDEEIVFSGRPGNDGYQFPNSSGVLPMVNSISQPSLLNELTDRSVPVQNENKLHPFGLLWSELEGTNMKPIEVTNSKHTKSANMPSSMVRTAPVGKPEASLNAETWLDVYRRSMHSDQSIYQDASVAHSLPHIEQESNRFDLADQLMSHQYHQALQQRNLLSHSNEATLDHHMQQQNLIHQQQLLANRSTPDLDHFLNLQMQQQQQRQLQLQHQLQQQQLQQQQKLLQEQHQSQVQQVLLEQLLRRQMHDSGLGQTHIDPIRANNALDQVMMEQRLLHELQQQSHHQQRSVDPSFEQLFKAKFGHLPPHQEQRDLSELISRAQHGQIQSLDHQLLQQEMLQSRQLSMALRQRANMEDKRHVGGPIWPEDEADQQFFRGHAGTQRLPTSGFELYQHQQRQAHADQLNHLERNLSFQDRFRLGLYEPASLPLERSISYPDVAQGMNLDVVNAMARARALELQESSAHNPPGGQLGQYAPGTIPQNHHHSLVGNQFHVSHFDGTEGSWSEKNERLGNDWMESRIQQLHINAEQQKRELEAKMVSEDPTLWMSDGLNDEKSKQLLMELLNQKSVHQPTESLDVGSGASFNRASSGLYSGSGSLEQSFILHSGKERGMNNTLPVGSYGSNSYEPLQDEHPGSLTSNEKVPYRSDSVSVVKGASILAGLKANGAVNSSSSGMAGNLSMNRDVLEVEGRARGLKGEGLMKTQAFQIQESMLDQVASADRGEFSMDTHTLSRHSSLGSAGFHNEKIANTFPEEVAKDQVTIHNKDNTLLKRPPVSRTSASQDGLSVLIPDPVVRGKNSDGGRPDPTGILVNQENMAAMKKEMRFRRSSSCSDSDVSETSFIDMLKKTAPQEAHLTTAGVSEPSDGMQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLDD 1632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3067173 3075825 + CrPI670011_06g009590.1 Cre06g0959 500421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0959 1632 Coils Coil 987 1007 - -
Cre06g0959 1632 MobiDBLite consensus disorder prediction 1581 1608 - -
Cre06g0959 1632 SMART gyf_5 581 635 IPR003169 GO:0005515(InterPro)
Cre06g0959 1632 MobiDBLite consensus disorder prediction 1515 1534 - -
Cre06g0959 1632 ProSiteProfiles GYF domain profile. 580 630 IPR003169 GO:0005515(InterPro)
Cre06g0959 1632 Pfam GYF domain 584 621 IPR003169 GO:0005515(InterPro)
Cre06g0959 1632 Coils Coil 1238 1262 - -
Cre06g0959 1632 CDD GYF 580 637 IPR003169 GO:0005515(InterPro)
Cre06g0959 1632 Gene3D - 567 650 IPR035445 -
Cre06g0959 1632 SUPERFAMILY GYF domain 576 636 IPR035445 -
Cre06g0959 1632 MobiDBLite consensus disorder prediction 90 230 - -
Cre06g0959 1632 MobiDBLite consensus disorder prediction 240 260 - -
Cre06g0959 1632 MobiDBLite consensus disorder prediction 508 539 - -
Cre06g0959 1632 MobiDBLite consensus disorder prediction 1345 1367 - -
Cre06g0959 1632 MobiDBLite consensus disorder prediction 1 284 - -
Cre06g0959 1632 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1632 - -
Cre06g0959 1632 Coils Coil 923 945 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0959 K18730 - - csv:101204211 2798.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0959 Cre-Chr6:3067173 Cre08g1461 Cre-Chr8:27502296 1.10E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1304 . . . . Bpe13g00818 . . . . . . . . . . . . . . . . . . . Cla06g00177 Cam06g0034 Cec06g0196 Cco06g0191 Clacu06g0193 Cmu06g0187 Cre06g0959 . . . . . . . . Blo02g00198 . . . Bpe14g00803 . . . . . . . . . . . . Bhi12g02418 . . . Hepe03g1143 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44