Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre06g0977 | ATGATGATGCGGCAGAATTTGGTTTCAGTTGTTACTGAAGTAGACAGTTCGATGTTTGCTGTAATGGTGGATTTTAATCTTGGGGAAAGAGAAGCTTGTATGATTTCTGTACCACTTTGCTTGTTTGTATTTGTTCCGAAGGGTGTAAAGTTGAACTGGGAAGGATCCAGATTGAGGGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATCCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTGCCATTCGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCTTTGCAGTGGCAACTCACAGTTCGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCGACGTTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCAATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATCCGGTGCTACTCAATGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA | 1146 | 45.81 | MMMRQNLVSVVTEVDSSMFAVMVDFNLGEREACMISVPLCLFVFVPKGVKLNWEGSRLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHPLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPLCSGNSQFDFTDRRKSMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPFLNVGSSDVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQSNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSMFQDGPDGSSVDLFRF | 381 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3247078 | 3249551 | + | CrPI670011_06g009770.1 | Cre06g0977 | 500439 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre06g0977 | 381 | ProSiteProfiles | Zinc finger SBP-type profile. | 100 | 177 | IPR004333 | GO:0003677(InterPro) | |
| Cre06g0977 | 381 | Pfam | SBP domain | 103 | 176 | IPR004333 | GO:0003677(InterPro) | |
| Cre06g0977 | 381 | SUPERFAMILY | SBT domain | 101 | 182 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Cre06g0977 | 381 | Gene3D | - | 95 | 164 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Cre06g0977 | 381 | FunFam | Squamosa promoter-binding-like protein 14 | 95 | 164 | - | - | |
| Cre06g0977 | 381 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 79 | 350 | IPR044817 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g1498 | Cre-Chr1:28217262 | Cre06g0977 | Cre-Chr6:3247078 | 1.40E-32 | dispersed | |
| Cre05g1528 | Cre-Chr5:20401894 | Cre06g0977 | Cre-Chr6:3247078 | 1.70E-36 | dispersed | |
| Cre06g0977 | Cre-Chr6:3247078 | Cre06g2654 | Cre-Chr6:34129125 | 4.70E-40 | dispersed | |
| Cre11g2307 | Cre-Chr11:34665818 | Cre06g0977 | Cre-Chr6:3247078 | 8.50E-31 | transposed | |
| Cre03g0680 | Cre-Chr3:5660873 | Cre06g0977 | Cre-Chr6:3247078 | 3.90E-42 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 53835 | PF03110 | SBP | 1.90E-29 | No_clan | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre06g0977 | - | - | - | 0.0 |