Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0977 ATGATGATGCGGCAGAATTTGGTTTCAGTTGTTACTGAAGTAGACAGTTCGATGTTTGCTGTAATGGTGGATTTTAATCTTGGGGAAAGAGAAGCTTGTATGATTTCTGTACCACTTTGCTTGTTTGTATTTGTTCCGAAGGGTGTAAAGTTGAACTGGGAAGGATCCAGATTGAGGGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATCCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTGCCATTCGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCTTTGCAGTGGCAACTCACAGTTCGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCGACGTTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCAATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATCCGGTGCTACTCAATGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA 1146 45.81 MMMRQNLVSVVTEVDSSMFAVMVDFNLGEREACMISVPLCLFVFVPKGVKLNWEGSRLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHPLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPLCSGNSQFDFTDRRKSMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPFLNVGSSDVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQSNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSMFQDGPDGSSVDLFRF 381
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 3247078 3249551 + CrPI670011_06g009770.1 Cre06g0977 500439
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0977 381 ProSiteProfiles Zinc finger SBP-type profile. 100 177 IPR004333 GO:0003677(InterPro)
Cre06g0977 381 Pfam SBP domain 103 176 IPR004333 GO:0003677(InterPro)
Cre06g0977 381 SUPERFAMILY SBT domain 101 182 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g0977 381 Gene3D - 95 164 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g0977 381 FunFam Squamosa promoter-binding-like protein 14 95 164 - -
Cre06g0977 381 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 79 350 IPR044817 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1498 Cre-Chr1:28217262 Cre06g0977 Cre-Chr6:3247078 1.40E-32 dispersed
Cre05g1528 Cre-Chr5:20401894 Cre06g0977 Cre-Chr6:3247078 1.70E-36 dispersed
Cre06g0977 Cre-Chr6:3247078 Cre06g2654 Cre-Chr6:34129125 4.70E-40 dispersed
Cre11g2307 Cre-Chr11:34665818 Cre06g0977 Cre-Chr6:3247078 8.50E-31 transposed
Cre03g0680 Cre-Chr3:5660873 Cre06g0977 Cre-Chr6:3247078 3.90E-42 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53835 PF03110 SBP 1.90E-29 No_clan Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0977 - - - 0.0