Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0977 ATGATGATGCGGCAGAATTTGGTTTCAGTTGTTACTGAAGTAGACAGTTCGATGTTTGCTGTAATGGTGGATTTTAATCTTGGGGAAAGAGAAGCTTGTATGATTTCTGTACCACTTTGCTTGTTTGTATTTGTTCCGAAGGGTGTAAAGTTGAACTGGGAAGGATCCAGATTGAGGGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATCCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTGCCATTCGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCTTTGCAGTGGCAACTCACAGTTCGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCGACGTTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCAATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATCCGGTGCTACTCAATGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA 1146 45.81 MMMRQNLVSVVTEVDSSMFAVMVDFNLGEREACMISVPLCLFVFVPKGVKLNWEGSRLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHPLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPLCSGNSQFDFTDRRKSMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPFLNVGSSDVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQSNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSMFQDGPDGSSVDLFRF 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3247078 3249551 + CrPI670011_06g009770.1 Cre06g0977 500439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0977 381 ProSiteProfiles Zinc finger SBP-type profile. 100 177 IPR004333 GO:0003677(InterPro)
Cre06g0977 381 Pfam SBP domain 103 176 IPR004333 GO:0003677(InterPro)
Cre06g0977 381 SUPERFAMILY SBT domain 101 182 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g0977 381 Gene3D - 95 164 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g0977 381 FunFam Squamosa promoter-binding-like protein 14 95 164 - -
Cre06g0977 381 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 79 350 IPR044817 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0977 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1498 Cre-Chr1:28217262 Cre06g0977 Cre-Chr6:3247078 1.40E-32 dispersed
Cre05g1528 Cre-Chr5:20401894 Cre06g0977 Cre-Chr6:3247078 1.70E-36 dispersed
Cre06g0977 Cre-Chr6:3247078 Cre06g2654 Cre-Chr6:34129125 4.70E-40 dispersed
Cre11g2307 Cre-Chr11:34665818 Cre06g0977 Cre-Chr6:3247078 8.50E-31 transposed
Cre03g0680 Cre-Chr3:5660873 Cre06g0977 Cre-Chr6:3247078 3.90E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1273 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00193 Cam06g0016 Cec06g0214 Cco06g0208 Clacu06g0211 Cmu06g0204 Cre06g0977 . . . . . . Chy11g01795 Cme11g02326 . . . . . . . . Sed08g1495 . . . . . . Cpe17g01068 . Bhi12g02448 Tan06g1510 Cmetu11g0895 . Hepe03g1119 . . . . . . . . . Lsi09g01730 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1335 . 181 1009 SBP-box Gene Family AT2G47070 55.2 1.5e-239 826.2
Cre10g1335 . 25 1009 SBP-box Gene Family AT3G60030 54.1 6.7e-274 940.6
Cre06g0977 . 73 216 SBP-box Gene Family AT5G50570 55.8 1.1e-38 157.9
Cre01g1498 . 118 276 SBP-box Gene Family AT1G69170 54.7 1.2e-41 167.9
Cre06g2410 . 152 292 SBP-box Gene Family AT1G69170 60.3 1.5e-41 167.5
Cre10g1335 . 181 1009 SBP-box Gene Family AT2G47070 55.2 1.5e-239 826.2
Cre01g1498 . 118 276 SBP-box Gene Family AT1G69170 54.7 1.2e-41 167.9
Cre06g2410 . 152 292 SBP-box Gene Family AT1G69170 60.3 1.5e-41 167.5
Cre10g1335 . 25 1009 SBP-box Gene Family AT3G60030 54.1 6.7e-274 940.6
Cre06g0977 . 73 216 SBP-box Gene Family AT5G50570 55.8 1.1e-38 157.9
Cre06g0977 . 73 216 SBP-box Gene Family AT5G50670 55.8 1.1e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53835 PF03110 SBP 1.90E-29 No_clan Cre TF