Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0979 ATGGGAAGAGGGAGAGTAGAATTGAAGAGAATAGAGAACAAGATCAATCGACAAGTGACCTTCGCAAAACGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCGGTTCTTTGCGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCTAATGTCTCCACAAGAGAGGCCTTGGAATTGAGCAGCCAGCAAGAGTATTTGAAGCTTAAAGCTCGCTATGAAGCTCTTCAACGATCCCAAAGGAACCTGTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTGAAGCAGATCAGATCAACAAGGACTCAGTACATGCTAGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAGTTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTTCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTTCCAGGATGGTTGCCTTGA 729 43.21 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPSGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3301801 3307590 + CrPI670011_06g009790.1 Cre06g0979 500441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0979 242 FunFam MADS-box transcription factor 7 13 98 - -
Cre06g0979 242 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre06g0979 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre06g0979 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre06g0979 242 Coils Coil 126 146 - -
Cre06g0979 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre06g0979 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre06g0979 242 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre06g0979 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre06g0979 242 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre06g0979 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre06g0979 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre06g0979 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre06g0979 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre06g0979 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre06g0979 242 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0798 Cre-Chr6:1338450 Cre06g0979 Cre-Chr6:3301801 1.80E-56 dispersed
Cre06g0979 Cre-Chr6:3301801 Cre07g1952 Cre-Chr7:34922361 4.80E-83 dispersed
Cre06g0979 Cre-Chr6:3301801 Cre06g0980 Cre-Chr6:3320121 9.30E-18 tandem
Cre03g0678 Cre-Chr3:5648817 Cre06g0979 Cre-Chr6:3301801 2.70E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53836 PF01486 K-box 2.90E-26 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0979 - - - 0.0