Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0984 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCGGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCGAACGATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCACTTGATTCTAGTAGGACAGCGGTTCTTGAGTCTCAAGACAGACATTCTCTTCTATGGAATGAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGAACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCTATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCACTAGACAATCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAGGTTGACACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCGGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGAGTTTGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCGACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTAGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTACTAGTTGGTAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCACGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCGTTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTCGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTCTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATCACTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGGATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACCCTGCAGCATTGACTTCTGTCGCCGATGTTTCTGGAATGGAAGATTGTAATCAATATCCTAAGTTTGTATAG 2862 42.59 MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGTESGSTSGSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNDRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQDANGKHHHYNMAHEFIFSGEGTQPWGDALDSSRTAVLESQDRHSLLWNEKENPSSPSTVDNEQCNWLYSRGKTFPMLGGCTSTEYSSPLDNHDVNSNYNIPFLKQEHGNSFEVDTSLIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVREFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKLRLWLSSQQKDRHDLAGCSLSKKEQGVIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELPKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNPAALTSVADVSGMEDCNQYPKFV 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3363884 3386700 + CrPI670011_06g009840.1 Cre06g0984 500446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0984 953 ProSiteProfiles IQ motif profile. 735 763 - -
Cre06g0984 953 MobiDBLite consensus disorder prediction 132 178 - -
Cre06g0984 953 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 921 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cre06g0984 953 Pfam IQ calmodulin-binding motif 817 836 IPR000048 GO:0005515(InterPro)
Cre06g0984 953 Pfam IQ calmodulin-binding motif 794 812 IPR000048 GO:0005515(InterPro)
Cre06g0984 953 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Cre06g0984 953 ProSiteProfiles Ankyrin repeat region circular profile. 617 643 - -
Cre06g0984 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 737 843 IPR027417 -
Cre06g0984 953 Pfam IPT/TIG domain 389 462 IPR002909 -
Cre06g0984 953 ProSiteProfiles IQ motif profile. 815 839 - -
Cre06g0984 953 SMART ANK_2a 617 646 IPR002110 GO:0005515(InterPro)
Cre06g0984 953 MobiDBLite consensus disorder prediction 131 178 - -
Cre06g0984 953 ProSiteProfiles IQ motif profile. 792 821 - -
Cre06g0984 953 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Cre06g0984 953 Gene3D - 548 679 IPR036770 -
Cre06g0984 953 ProSiteProfiles Ankyrin repeat profile. 617 649 IPR002110 GO:0005515(InterPro)
Cre06g0984 953 SMART iq_5 734 756 IPR000048 GO:0005515(InterPro)
Cre06g0984 953 SMART iq_5 814 836 IPR000048 GO:0005515(InterPro)
Cre06g0984 953 SMART iq_5 791 813 IPR000048 GO:0005515(InterPro)
Cre06g0984 953 Gene3D - 792 839 - -
Cre06g0984 953 Gene3D Immunoglobulins 383 476 IPR013783 -
Cre06g0984 953 SUPERFAMILY E set domains 389 472 IPR014756 -
Cre06g0984 953 CDD IPT 389 473 - -
Cre06g0984 953 SUPERFAMILY Ankyrin repeat 586 678 IPR036770 -
Cre06g0984 953 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Cre06g0984 953 Pfam Ankyrin repeats (3 copies) 590 676 IPR002110 GO:0005515(InterPro)
Cre06g0984 953 FunFam Calmodulin-binding transcription activator 2 791 839 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0984 K21596 - - csv:101222798 1668.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0984 Cre-Chr6:3363884 Cre06g1228 Cre-Chr6:6152604 4.70E-113 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1059 . 36 635 CAMTA Transcription Factor Family AT2G22300 53.1 7.5e-167 585.1
Cre09g1559 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 5.6e-277 951.0
Cre10g1060 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.7 3.5e-53 207.6
Cre06g0984 . 6 924 CAMTA Transcription Factor Family AT1G67310 52.3 2.2e-254 875.9
Cre06g1228 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 8.3e-260 893.6
Cre06g1228 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 4.9e-192 668.7
Cre09g1559 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 5.6e-277 951.0
Cre10g1060 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.7 3.5e-53 207.6
Cre10g1059 . 36 635 CAMTA Transcription Factor Family AT2G22300 53.1 7.5e-167 585.1
Cre06g0984 . 6 924 CAMTA Transcription Factor Family AT1G67310 52.3 2.2e-254 875.9
Cre06g1228 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 4.9e-192 668.7
Cre06g1228 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 8.3e-260 893.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53838 PF03859 CG-1 5.20E-48 No_clan Cre TF