Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g0986 ATGGCGTCAAATGGCCATAGAACTGCGATGTCAGAAGCTTCTGTAATTTCAATACCCATAGCTTTGGCGACACGTGACACAATCTGGTTGGTTCGAGATGTAAGAACCGCTTCTTCCATGAGTTCATTCTTTGTTGGGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTGCAACTTCCACTGCTATCTTTAATCCTTTCAATATCTTTTTGCTCTATAGATCTCTGAAGATTTCTTCCATGAACTGGTTCATTAATGGTGGAGTTATGGAAACTAAGGCTGGTTTGCTTGGTGGGGGTGGAAAGCTATGGCTTCAATTGTGGGAAACTGTCATTGGAAATTGTTGCAAGATGCATCACCAGTATTACCAGTATATTGGATCCAAGAAAGTTGGAAAAACATGGTGGAGAAGGCTTTTGGTGGCTTGGGTTTTTAGCTCTACTCTTGCTTCTTTATGGATCTTCCATTACATGAGCTCCCAAGCTACAGAGAAGAGGAAAGAAGCCTTGGGAAGCATGTGTGATGAAAGGGCTAGAATGCTTCAAGATCAGTTTAATGTCAGTATGAATCATATTCAGGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAAAACCCATCTGCTATAGATCAGAGGACGTTTGCGAGGTACACGGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCATATGCAGTAAGGGTGCTCCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGTCCGGTTCACGAAGATGACTATGCTCCAGAAGATCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTATTACGTGCTAGATCATCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGTTAATCAAAACAAATCGTCTAGGGGTCATACTTACATTTGCGGTCTACAAAAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGCGGAGTTTTTGATATCGAGTCTCTGGTGGAGAAGTTACTTCAACAGCTTGCTAGCAACCAAACCATCCTAGTGAATGTTTATGATACCACTAACCAATCACATCCAATCAGTATGTATGGTAAAGATGTATCAGTTGATGGGTTGCAGCATGTTAGTCCCCTTAACTTTGGGGATCCGGATAGGAAGCATGAGATGCGATGCAGATTCAAGCAAAAACAACCTTGGCCATGGCTGGCAATGACAACTTCAATTGGCATACTCATTATTGCATTGCTTGTGGGGTATATATTCCATGCAACGTTGAACCGAATTGCCAAAGTGGAGGATGATTATCATGAGATGATGGTACTCAAGAAACGGGCAGAAGATGCTGATATTGCCAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACTGACTTAGATGTGACTCAACAAGATTACGTTAAAACTGCACAAGACAGTGGAAAAGCTTTGGTATCATTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCTATACCTTTCAATCTGCGAGCAATTTTGGATGATATTTTATCACTCTTCTCTGGGAAATCTCAAGAAAAAGGACTGGAGCTGGCAGTTTACATTTCAGATAGTGTTCCCGAGACGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTTGTGGGAAACTCAATCAAGTTCACAGAGAAAGGGCACATATTTGTCACTGTTAATCTCGTCAAGGAGGTTATTGAATCAATTGATCTAGAGATCGAGTCATCAACAAATAGCACCTTGAGTGGCTATCCTATTGCAAATAGACGTCTCAGCTGGGCAGGATTTCGAACATTCAGTCAAGAGGGAACCACTGCTTGTCATTTCATGCCATCTCCACCAGACCTTATTAACCTCATGGTATCCGTGGAAGATACGGGTGTTGGTATTCCTCTAGAAGCCCAATCACGCATTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACTCATGGGGGAACAGGTATCGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTCACTGCGGTTTTCACAAACGGATCTTCCAATTCGAGTGAGTATAACAAAACCCAACAAATTAAGAACACTTCCATCACTGCAACCTCAGAATTTAAGGGTATGAGAGCATTAGTTGTGGACCATCAACCTATTCGAGCCAAAGTATCAAGATATCATATCCAACGACTTGGAATAAATGTCGAAGTCTTATCTGACTTGAATCAATGTCTGTCTACCACGACTATTAGTGGTTCAACTATCAATATGATTTTTGTTGAGCAGAAACTTTGGGATCAGGATACGAGCGCATCAGATCATTTTATCAAAAACTTGAGAAATTCTTATGCGGTTCCTCCCAAACTATTTCTTCTTACTAGCTCCATTAGTTCTTCAAAAACTAGCACTATAATTTCTGATGCATTCACTCCCACTGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGCTGCCTCTCTACACCGAGTCATGGGTGTGGGGATCAAGGTTAATCCTCGCAACGGAGAGCTTCCTGTTCTCTCACTCCGCAGTTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTGAATCGTATAGTCGCTGCTGGTGCTCTACAGCGGTATGGAGCTGATGTAGTATGTGAAAACAGTGGACGAGATGCAATCCGACTGCTTACGCCACCCCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGACGGCTTTGAAGCTACAAGAAGAATTCGGGAAATCGAACATCGAATCAATGATGGTATCCAAGTTGGAGAACTATCAAAAGAAGCATACGAGAATACATGTTATTGGCGCGTTCCCATCTTGGCCATGACTGCAGACGTAATCCAGGCCACGCATGAGGAATGCCTTCGGTGTGGGATGGATGGGTACGTTTCGAAACCATTTGAAGTTGAGCGACTTTACCGGGAAGCATGTACAGCATGCTTAAAAGGGTGTAAATTACCTCCGATCGAAGGTGATCAAGTTCTTGGATTGCTTCATATTATACCAGGCAAGCCTAAATTTTGTGGAAAAGTGTAA 3345 42.72 MASNGHRTAMSEASVISIPIALATRDTIWLVRDVRTASSMSSFFVGFSSSSSSSSSAATSTAIFNPFNIFLLYRSLKISSMNWFINGGVMETKAGLLGGGGKLWLQLWETVIGNCCKMHHQYYQYIGSKKVGKTWWRRLLVAWVFSSTLASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVLRARSSGKGVLTAPFRLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSVDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLVGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPETLIGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIESSTNSTLSGYPIANRRLSWAGFRTFSQEGTTACHFMPSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNGSSNSSEYNKTQQIKNTSITATSEFKGMRALVVDHQPIRAKVSRYHIQRLGINVEVLSDLNQCLSTTTISGSTINMIFVEQKLWDQDTSASDHFIKNLRNSYAVPPKLFLLTSSISSSKTSTIISDAFTPTVILKPLRAGMLAASLHRVMGVGIKVNPRNGELPVLSLRSLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIRLLTPPHHFDACFMDIQMPEMDGFEATRRIREIEHRINDGIQVGELSKEAYENTCYWRVPILAMTADVIQATHEECLRCGMDGYVSKPFEVERLYREACTACLKGCKLPPIEGDQVLGLLHIIPGKPKFCGKV 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3392000 3401939 - CrPI670011_06g009860.1 Cre06g0986 500448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g0986 1114 ProSiteProfiles Response regulatory domain profile. 799 920 IPR001789 GO:0000160(InterPro)
Cre06g0986 1114 PANTHER TWO-COMPONENT HISTIDINE KINASE 133 1077 IPR050956 -
Cre06g0986 1114 SUPERFAMILY CheY-like 944 1077 IPR011006 -
Cre06g0986 1114 Pfam Response regulator receiver domain 947 1076 IPR001789 GO:0000160(InterPro)
Cre06g0986 1114 PRINTS Bacterial sensor protein C-terminal signature 695 709 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre06g0986 1114 PRINTS Bacterial sensor protein C-terminal signature 713 723 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre06g0986 1114 PRINTS Bacterial sensor protein C-terminal signature 730 748 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre06g0986 1114 Gene3D - 945 1089 - -
Cre06g0986 1114 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 694 766 IPR003594 -
Cre06g0986 1114 FunFam Histidine kinase 4 466 557 - -
Cre06g0986 1114 SMART HKATPase_4 606 770 IPR003594 -
Cre06g0986 1114 Pfam CHASE domain 210 406 IPR006189 -
Cre06g0986 1114 Gene3D - 558 772 IPR036890 -
Cre06g0986 1114 CDD HATPase_EvgS-ArcB-TorS-like 611 768 - -
Cre06g0986 1114 FunFam Histidine kinase 4 211 440 - -
Cre06g0986 1114 SUPERFAMILY CheY-like 794 921 IPR011006 -
Cre06g0986 1114 SMART REC_2 945 1079 IPR001789 GO:0000160(InterPro)
Cre06g0986 1114 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 548 765 IPR036890 -
Cre06g0986 1114 ProSiteProfiles Response regulatory domain profile. 946 1083 IPR001789 GO:0000160(InterPro)
Cre06g0986 1114 CDD REC_hyHK_CKI1_RcsC-like 947 1077 - -
Cre06g0986 1114 Gene3D - 463 557 - -
Cre06g0986 1114 Pfam His Kinase A (phospho-acceptor) domain 494 559 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre06g0986 1114 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 480 560 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre06g0986 1114 SMART HisKA_10 494 559 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre06g0986 1114 Gene3D CHASE domain 211 440 IPR042240 -
Cre06g0986 1114 CDD HisKA 494 555 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre06g0986 1114 Gene3D - 158 210 - -
Cre06g0986 1114 ProSiteProfiles CHASE domain profile. 207 433 IPR006189 -
Cre06g0986 1114 ProSiteProfiles Histidine kinase domain profile. 501 770 IPR005467 -
Cre06g0986 1114 SMART CHASE_2 207 408 IPR006189 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1268 Cre-Chr2:13941677 Cre06g0986 Cre-Chr6:3392000 1.00E-301 dispersed
Cre06g0986 Cre-Chr6:3392000 Cre11g0603 Cre-Chr11:3144989 3.80E-284 dispersed
Cre06g0986 Cre-Chr6:3392000 Cre02g0608 Cre-Chr2:3057570 4.8e-311 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53839 PF03924 CHASE 2.90E-37 CL0165 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g0986 K14489 - csv:101216313 1879.76