Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1000 ATGGATCAATTTCTTACCAAAACAAAAGAAGATCAAGAAGATCAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGATCAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCACTCCCAATTGACTCAACAACAAGATCGAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCAACCGATACTCATGGATTTATCCTTAAGAATGGAAAGCAATGGCTTTGATGGTGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCAAGTGATGTTGGCAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTGAACTTTGAAGACCGTCATGGAAAGCCTTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTTGACGCCGGCGACATCGTTTCCTTCCACCGTGCTCTCCCGAGTCATTCCGCCAACGACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCTGACGCTCCTACTCCTCATCACAATCACCACCACCATTTCTCCAACCCTTTTCTCTTTCGTTGGGCTACTGCTCGTCACTTGCCACCACCACTGCCTCCTATGCGACGAACAACTCAACACCACCATCTTTACCCTAATTACGGGTTTGAAGTCCCTAATTTTGGGATGTCTAATAACAATAATTCTTCCATGTATTATTTTCGACCTATGTCGCCTTCTTCTTCTTCTTCGTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGATGTTCTTCTATGGGGATTATTAACAAACCCGGCTCCGGCACTGCGAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCAGATGGAGAAGGAGGAGGAGGAGAGGATTTGTCGAACAGTGGCGATTCGAGAAGAGGGAAAGAACCCTTGTCATTGAATTGGGATTTACTTTAA 1053 42.45 MDQFLTKTKEDQEDQEEEDEEEEEEDQDQVVACNFFPNSHSQLTQQQDRDQESGNYESQNEDQPILMDLSLRMESNGFDGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSANDNRLFIDWRRRRPDAPTPHHNHHHHFSNPFLFRWATARHLPPPLPPMRRTTQHHHLYPNYGFEVPNFGMSNNNNSSMYYFRPMSPSSSSSSLYRMGNGDEIVVNNQGCSSMGIINKPGSGTAKRLRLFGVNMECASPDGEGGGGEDLSNSGDSRRGKEPLSLNWDLL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3567285 3568337 + CrPI670011_06g010000.1 Cre06g1000 500462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1000 350 MobiDBLite consensus disorder prediction 1 63 - -
Cre06g1000 350 MobiDBLite consensus disorder prediction 12 29 - -
Cre06g1000 350 Gene3D - 81 209 IPR015300 -
Cre06g1000 350 ProSiteProfiles B3 DNA-binding domain profile. 88 195 IPR003340 GO:0003677(InterPro)
Cre06g1000 350 Coils Coil 5 29 - -
Cre06g1000 350 CDD B3_DNA 86 175 IPR003340 GO:0003677(InterPro)
Cre06g1000 350 SMART B3_2 88 195 IPR003340 GO:0003677(InterPro)
Cre06g1000 350 MobiDBLite consensus disorder prediction 318 350 - -
Cre06g1000 350 Pfam B3 DNA binding domain 88 194 IPR003340 GO:0003677(InterPro)
Cre06g1000 350 SUPERFAMILY DNA-binding pseudobarrel domain 85 176 IPR015300 -
Cre06g1000 350 MobiDBLite consensus disorder prediction 32 63 - -
Cre06g1000 350 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 315 IPR044800 GO:0003700(InterPro)
Cre06g1000 350 FunFam B3 domain-containing protein 81 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2474 Cre-Chr5:36120339 Cre06g1000 Cre-Chr6:3567285 9.50E-40 dispersed
Cre06g1000 Cre-Chr6:3567285 Cre07g1170 Cre-Chr7:24085315 8.30E-52 dispersed
Cre06g1000 Cre-Chr6:3567285 Cre09g2381 Cre-Chr9:43162532 9.90E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53841 PF02362 B3 2.30E-28 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1000 K09287 - csv:101221141 527.324