Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g1000 | ATGGATCAATTTCTTACCAAAACAAAAGAAGATCAAGAAGATCAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGATCAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCACTCCCAATTGACTCAACAACAAGATCGAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCAACCGATACTCATGGATTTATCCTTAAGAATGGAAAGCAATGGCTTTGATGGTGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCAAGTGATGTTGGCAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTGAACTTTGAAGACCGTCATGGAAAGCCTTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTTGACGCCGGCGACATCGTTTCCTTCCACCGTGCTCTCCCGAGTCATTCCGCCAACGACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCTGACGCTCCTACTCCTCATCACAATCACCACCACCATTTCTCCAACCCTTTTCTCTTTCGTTGGGCTACTGCTCGTCACTTGCCACCACCACTGCCTCCTATGCGACGAACAACTCAACACCACCATCTTTACCCTAATTACGGGTTTGAAGTCCCTAATTTTGGGATGTCTAATAACAATAATTCTTCCATGTATTATTTTCGACCTATGTCGCCTTCTTCTTCTTCTTCGTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGATGTTCTTCTATGGGGATTATTAACAAACCCGGCTCCGGCACTGCGAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCAGATGGAGAAGGAGGAGGAGGAGAGGATTTGTCGAACAGTGGCGATTCGAGAAGAGGGAAAGAACCCTTGTCATTGAATTGGGATTTACTTTAA | 1053 | 42.45 | MDQFLTKTKEDQEDQEEEDEEEEEEDQDQVVACNFFPNSHSQLTQQQDRDQESGNYESQNEDQPILMDLSLRMESNGFDGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSANDNRLFIDWRRRRPDAPTPHHNHHHHFSNPFLFRWATARHLPPPLPPMRRTTQHHHLYPNYGFEVPNFGMSNNNNSSMYYFRPMSPSSSSSSLYRMGNGDEIVVNNQGCSSMGIINKPGSGTAKRLRLFGVNMECASPDGEGGGGEDLSNSGDSRRGKEPLSLNWDLL | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3567285 | 3568337 | + | CrPI670011_06g010000.1 | Cre06g1000 | 500462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g1000 | 350 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Cre06g1000 | 350 | MobiDBLite | consensus disorder prediction | 12 | 29 | - | - | |
Cre06g1000 | 350 | Gene3D | - | 81 | 209 | IPR015300 | - | |
Cre06g1000 | 350 | ProSiteProfiles | B3 DNA-binding domain profile. | 88 | 195 | IPR003340 | GO:0003677(InterPro) | |
Cre06g1000 | 350 | Coils | Coil | 5 | 29 | - | - | |
Cre06g1000 | 350 | CDD | B3_DNA | 86 | 175 | IPR003340 | GO:0003677(InterPro) | |
Cre06g1000 | 350 | SMART | B3_2 | 88 | 195 | IPR003340 | GO:0003677(InterPro) | |
Cre06g1000 | 350 | MobiDBLite | consensus disorder prediction | 318 | 350 | - | - | |
Cre06g1000 | 350 | Pfam | B3 DNA binding domain | 88 | 194 | IPR003340 | GO:0003677(InterPro) | |
Cre06g1000 | 350 | SUPERFAMILY | DNA-binding pseudobarrel domain | 85 | 176 | IPR015300 | - | |
Cre06g1000 | 350 | MobiDBLite | consensus disorder prediction | 32 | 63 | - | - | |
Cre06g1000 | 350 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 12 | 315 | IPR044800 | GO:0003700(InterPro) | |
Cre06g1000 | 350 | FunFam | B3 domain-containing protein | 81 | 206 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g2474 | Cre-Chr5:36120339 | Cre06g1000 | Cre-Chr6:3567285 | 9.50E-40 | dispersed | |
Cre06g1000 | Cre-Chr6:3567285 | Cre07g1170 | Cre-Chr7:24085315 | 8.30E-52 | dispersed | |
Cre06g1000 | Cre-Chr6:3567285 | Cre09g2381 | Cre-Chr9:43162532 | 9.90E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53841 | PF02362 | B3 | 2.30E-28 | CL0405 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g1000 | K09287 | - | csv:101221141 | 527.324 |