Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1039 ATGCTAAAGTTCCTCGGACTCACCAAGGCTACATCTCAAGCTCAGCACCATGTAAATGCAGTGGAAGCTCACTTAACAAATTCAATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCCGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGATGAAAAGAGAAGAGAGAAACGCCGCTGGATTTTCAGAAAACCAACAAATCAGCCGCCGGAGCCACTCGCCGCCCACCAACCGCCGTCTAAGCCACCGGCTCTGTCCATTCATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTCGCCGCCAGAGCGGCTGCACAAGCCGTCCACCTCACCCGCCCTGCCCGTCCTGGATTGGATCGCCATCGCCTCGCCGCCATTGTGATTCAAACTGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTGGTGAAGTTGCAGGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACGACGCTGCAGTGTATGAAAGCATTAGTGAGAGTGCAGGAAAAAGTTCTCGATCACCGGATGCGACTTTCCCTCGAGGGTAGCCGACGGTCTACATTCAGCGACACCAACAGCGTGTATGAATCTCGCTATGCTCAAGACGTCTCCGAGAGGAAGACTATTAAGTGTGTATCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTAAAAGCAATGTTACAATATAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAGCGGAGCTTGAAGAAGGACAAAAATGGCTCGACCAATGGATGGCGAAGAAGCCATGGGAGAATAGAGCAAGAGCTTCCACAGATAACAGACCACAGCCCCTTAAAACGCTCGAAATCGACACCTCTAGGCCCTACTCTTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACGCAATCACAAAGATCGAACTCGCTTTCCTCATCCTCCCCACTCCACAGAGCCCATCACCATCAGTTCTCCATCACCCCTTCCCCATCAAAATCTCGACCGGTCCAGCAAGTTCGGTCGGCGAGTCCCCGCTACAGCAGAGAAGATAGAAACCAAATCAGCCACCACATTACATCCCAAACACCAAGCTTGAGGACAAAACATCAACATCACAAATGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTCCGGTCGCAAAGTGCGCCGAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAGCGGCTATCTTTTCCAGTACCGCCGGATCCTTACGGTAGAATAGCAGGGTGCGGTGTTTATGGGAATAGCATGAAGAGCCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCACCATCTTCAACCACTGACCTCAGAAGGTGGCTGAGATGA 1614 49.94 MLKFLGLTKATSQAQHHVNAVEAHLTNSMGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQPPEPLAAHQPPSKPPALSIHSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYAQDVSERKTIKCVSREGSSITEDWDERAHTVEEVKAMLQYRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQAELEEGQKWLDQWMAKKPWENRARASTDNRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHRAHHHQFSITPSPSKSRPVQQVRSASPRYSREDRNQISHHITSQTPSLRTKHQHHKWGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYGRIAGCGVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4109017 4111935 + CrPI670011_06g010390.1 Cre06g1039 500501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1039 537 MobiDBLite consensus disorder prediction 311 474 - -
Cre06g1039 537 Pfam Protein of unknown function (DUF4005) 391 497 IPR025064 -
Cre06g1039 537 ProSiteProfiles IQ motif profile. 131 159 - -
Cre06g1039 537 MobiDBLite consensus disorder prediction 512 537 - -
Cre06g1039 537 MobiDBLite consensus disorder prediction 65 85 - -
Cre06g1039 537 FunFam IQ-domain 11 130 181 - -
Cre06g1039 537 PANTHER IQ-DOMAIN 5-RELATED 37 466 - -
Cre06g1039 537 ProSiteProfiles IQ motif profile. 155 182 - -
Cre06g1039 537 SMART iq_5 153 174 IPR000048 GO:0005515(InterPro)
Cre06g1039 537 SMART iq_5 130 152 IPR000048 GO:0005515(InterPro)
Cre06g1039 537 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515(InterPro)
Cre06g1039 537 Pfam IQ calmodulin-binding motif 158 174 IPR000048 GO:0005515(InterPro)
Cre06g1039 537 MobiDBLite consensus disorder prediction 332 391 - -
Cre06g1039 537 MobiDBLite consensus disorder prediction 430 453 - -
Cre06g1039 537 Gene3D - 128 183 - -
Cre06g1039 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 176 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0080 Cre-Chr5:1008893 Cre06g1039 Cre-Chr6:4109017 2.90E-113 dispersed
Cre05g0975 Cre-Chr5:8986077 Cre06g1039 Cre-Chr6:4109017 2.40E-17 dispersed
Cre06g1039 Cre-Chr6:4109017 Cre09g0068 Cre-Chr9:935121 6.00E-17 dispersed
Cre06g1039 Cre-Chr6:4109017 Cre01g0429 Cre-Chr1:3658142 8.10E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1039 - - - 0.0