Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1069 ATGAGCAATTCAAAAGGAAAATTGAACTCTTGTAATATTTTTATAAAAGTTCCTGAAGATTATAGAAGAGAAGAGAAGGAAGCCCAAAGAAAGTACTCCATAAACAGAGAGAGAGAGAGACGAAAAGGAGAGAGAAATAGAAATCCTCAAGCAAACTCATCAGCTTCATCCAACAGAAGAACAAGAAGAAGAAAGAAGGAAGGAAGAAGAAAGAAGGCATTTGAGTTTCAGACCTTCCAAACACAAAGAAAAAGATCTCAACCTTCAATCTCCATTTTTGACCCAACACTGGAGGATTTCGAGAAGATTTCTGAGCTTCGTCCAAATGGGGTTTTGAATTTCACTTCTATTTCTGATTCTCCGCTGCCGCCGACCTTGCTCCGCCGTCACAACCTCCGTGAGAACTGGAGTTGTACTGATAATACCAATCTGCTCAAAGAGATTTGCTATGTGGGTGCTGCTGAACCCACCTCTGTTCTCGATACTAGAAGAAGCCCAAGCCCTCCCACTTCCACTTCCACACTGTCTTCCTCTCTCGGCGGCGGCGGCGGCGGTGGTGGTGGTACCGCCTCCACCGACACGACCGTGGCGGCGCCGCCGTCTTCTCTCCCTGAAAACCCTTCTCCTTTAGACAAATGCGGTGGCGGTGGCGGCCTTGGAATTGATGATTGGGAGAGCGTTTTGCCGGAATCCCCTGGTCAAGGTCCCTCCATTCTTGGGTTAATTATGAGCGATGTTGAAGATCCATCTCTTGGATTGAATAAGCTCCTGCAGAGCGGCGGTGGCGGTGGCGGCGGTGGTGGTTCTCATCTGGACTTGGAATTTTCCGTCGATCATGGGTTGGTCTTTGAAGCCAATACTCTCGCCGGTGAATCCATTGTCGACCCATCTCTTCAAGGCCCATCTTGCTCCGATTTCCACAATGCTAGACTCGCGGCGGCGGTGTCGAACTCAAACGCCATGTTTTCCGGTGTGTTTCAGAATCAAAATCAGATGGTGGAAGGCGTTGACGAGAAGCCACAGATTTTCAATTCTTCCCAAGTTGTGATGAATCAAAATCAAACTCAGTTCACTCAGAATCCAGCTCTGTTTATGCCTCTTCCTTATGCCTCCCCTGTCCAAGACCACCATCAGAACCACCACCACCACCACCTCCTTGGTGGTGCGCCGCCCGCAAAGCGGTTCAATTCCGGTTCAATTGGGCCAAATTATCCAGTGAAATCCCCATTTCTGGATTCGGGTCAAGAAAATTTCAATCGTAGACAACAACAACAACAGCCCCAACAAGTTCAGTTGTTTCCTCATCATTCCCATCATCACAACCTTCCTCAGCAGCAGCAGAGGCCATCCATGGCGGCCTTAGCAAAACAGAAAATGGTGAATGAAGATATAGCGAATCAACAACTCCAACAGGGCATTTCCGACCAGCTATTCAAGGCCGTAGAGCTGATCGAAACAGGCAATTCAGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCTTCCCCCATTGGGAAGCCCTTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCCTTGCAATTGCTCCTTCAAAACCCTTCAAACCCTTCCACCAATCCCAACCCTTCCCCTTTCTCTATCATTTTCAAAATCGCTGCTTACAAATCCTTCTCTGAAGTCTCCCCTGTTCTCCAATTTGCCAATTTCACCTCTAACCAAGCTCTCCTAGAAGCCTTCAATGGCTTCGATCGTATTCACATCATCGATTTCGACATTGGTTACGGTGGCCAATGGGCTTCTCTAATGCAAGAACTTGCTTTGAGAAGTAACACCACTGGAGGAGGACCCCCATTTCTCAGAATCACTGCCTTTGCTTCTACTTCCACACACGATGATTTCGAGCTCGGTTTCACTCAAGAAAACCTCAAGAATTTCGCAAACGATCTCAACATTGGATTCGAGCTCGAAGTCGTAAATGTAGAGTGTCTGAATTCTGGGTCTTGGCCTCTGCCACTCAATGTCTCTGAAGATGAAGCAATTGCAGTGAATCTCCCTGTGGGTTCATTCTTCAATTACTCACTTTCATTGCCAATGATTCTCCGTTTCATAAAACATCTTAACCCCAAAATCGTAGTGTCTGTGGATCGAGGTTGTAGCCGTATGGACGCGCCATTCCCACATCGAGTAATCAACGCTCTTCATTCATACTCTGCTTTGCTTGAATCCATGGAAGCTGTAACTATGAATATGGATACCCAATTGAAAATTGAAAGGTACTTGGTGCAACCATGTATTGAGAAAGTGGTAACAAATCCTCAATGTTCAAACGAAAGGGTTCCTCCATGGAAATCAGTGTTCTTATCATCTGGGTTTTGTCCATTGACATTCAGTAATTTCACGGAATCACAGGCAGAGTGTCTGCTGCAGCGGACGCCGGTTCAAGGATTTCATATCGACAAGAGACACTCCTCGCTTGTTCTTTGCTGGCATCGGAAGGAGCTCGTTTCAATCTCTGCTTGGAGGTCTTAA 2517 46.96 MSNSKGKLNSCNIFIKVPEDYRREEKEAQRKYSINRERERRKGERNRNPQANSSASSNRRTRRRKKEGRRKKAFEFQTFQTQRKRSQPSISIFDPTLEDFEKISELRPNGVLNFTSISDSPLPPTLLRRHNLRENWSCTDNTNLLKEICYVGAAEPTSVLDTRRSPSPPTSTSTLSSSLGGGGGGGGGTASTDTTVAAPPSSLPENPSPLDKCGGGGGLGIDDWESVLPESPGQGPSILGLIMSDVEDPSLGLNKLLQSGGGGGGGGGSHLDLEFSVDHGLVFEANTLAGESIVDPSLQGPSCSDFHNARLAAAVSNSNAMFSGVFQNQNQMVEGVDEKPQIFNSSQVVMNQNQTQFTQNPALFMPLPYASPVQDHHQNHHHHHLLGGAPPAKRFNSGSIGPNYPVKSPFLDSGQENFNRRQQQQQPQQVQLFPHHSHHHNLPQQQQRPSMAALAKQKMVNEDIANQQLQQGISDQLFKAVELIETGNSVLAQGILARLNHQLSSPIGKPFQRAAFYFKEALQLLLQNPSNPSTNPNPSPFSIIFKIAAYKSFSEVSPVLQFANFTSNQALLEAFNGFDRIHIIDFDIGYGGQWASLMQELALRSNTTGGGPPFLRITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEVVNVECLNSGSWPLPLNVSEDEAIAVNLPVGSFFNYSLSLPMILRFIKHLNPKIVVSVDRGCSRMDAPFPHRVINALHSYSALLESMEAVTMNMDTQLKIERYLVQPCIEKVVTNPQCSNERVPPWKSVFLSSGFCPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWRS 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4553384 4558698 - CrPI670011_06g010690.1 Cre06g1069 500531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1069 838 MobiDBLite consensus disorder prediction 160 180 - -
Cre06g1069 838 MobiDBLite consensus disorder prediction 19 72 - -
Cre06g1069 838 Pfam GRAS domain family 475 837 IPR005202 -
Cre06g1069 838 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 444 836 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre06g1069 838 ProSiteProfiles GRAS family profile. 464 837 IPR005202 -
Cre06g1069 838 MobiDBLite consensus disorder prediction 19 47 - -
Cre06g1069 838 MobiDBLite consensus disorder prediction 159 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1069 Cre-Chr6:4553384 Cre10g0519 Cre-Chr10:4433417 8.20E-138 dispersed
Cre06g1069 Cre-Chr6:4553384 Cre07g1266 Cre-Chr7:26588233 1.60E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53850 PF03514 GRAS 3.50E-98 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1069 K27747 - csv:101214718 1259.59