Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1069 ATGAGCAATTCAAAAGGAAAATTGAACTCTTGTAATATTTTTATAAAAGTTCCTGAAGATTATAGAAGAGAAGAGAAGGAAGCCCAAAGAAAGTACTCCATAAACAGAGAGAGAGAGAGACGAAAAGGAGAGAGAAATAGAAATCCTCAAGCAAACTCATCAGCTTCATCCAACAGAAGAACAAGAAGAAGAAAGAAGGAAGGAAGAAGAAAGAAGGCATTTGAGTTTCAGACCTTCCAAACACAAAGAAAAAGATCTCAACCTTCAATCTCCATTTTTGACCCAACACTGGAGGATTTCGAGAAGATTTCTGAGCTTCGTCCAAATGGGGTTTTGAATTTCACTTCTATTTCTGATTCTCCGCTGCCGCCGACCTTGCTCCGCCGTCACAACCTCCGTGAGAACTGGAGTTGTACTGATAATACCAATCTGCTCAAAGAGATTTGCTATGTGGGTGCTGCTGAACCCACCTCTGTTCTCGATACTAGAAGAAGCCCAAGCCCTCCCACTTCCACTTCCACACTGTCTTCCTCTCTCGGCGGCGGCGGCGGCGGTGGTGGTGGTACCGCCTCCACCGACACGACCGTGGCGGCGCCGCCGTCTTCTCTCCCTGAAAACCCTTCTCCTTTAGACAAATGCGGTGGCGGTGGCGGCCTTGGAATTGATGATTGGGAGAGCGTTTTGCCGGAATCCCCTGGTCAAGGTCCCTCCATTCTTGGGTTAATTATGAGCGATGTTGAAGATCCATCTCTTGGATTGAATAAGCTCCTGCAGAGCGGCGGTGGCGGTGGCGGCGGTGGTGGTTCTCATCTGGACTTGGAATTTTCCGTCGATCATGGGTTGGTCTTTGAAGCCAATACTCTCGCCGGTGAATCCATTGTCGACCCATCTCTTCAAGGCCCATCTTGCTCCGATTTCCACAATGCTAGACTCGCGGCGGCGGTGTCGAACTCAAACGCCATGTTTTCCGGTGTGTTTCAGAATCAAAATCAGATGGTGGAAGGCGTTGACGAGAAGCCACAGATTTTCAATTCTTCCCAAGTTGTGATGAATCAAAATCAAACTCAGTTCACTCAGAATCCAGCTCTGTTTATGCCTCTTCCTTATGCCTCCCCTGTCCAAGACCACCATCAGAACCACCACCACCACCACCTCCTTGGTGGTGCGCCGCCCGCAAAGCGGTTCAATTCCGGTTCAATTGGGCCAAATTATCCAGTGAAATCCCCATTTCTGGATTCGGGTCAAGAAAATTTCAATCGTAGACAACAACAACAACAGCCCCAACAAGTTCAGTTGTTTCCTCATCATTCCCATCATCACAACCTTCCTCAGCAGCAGCAGAGGCCATCCATGGCGGCCTTAGCAAAACAGAAAATGGTGAATGAAGATATAGCGAATCAACAACTCCAACAGGGCATTTCCGACCAGCTATTCAAGGCCGTAGAGCTGATCGAAACAGGCAATTCAGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCTTCCCCCATTGGGAAGCCCTTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCCTTGCAATTGCTCCTTCAAAACCCTTCAAACCCTTCCACCAATCCCAACCCTTCCCCTTTCTCTATCATTTTCAAAATCGCTGCTTACAAATCCTTCTCTGAAGTCTCCCCTGTTCTCCAATTTGCCAATTTCACCTCTAACCAAGCTCTCCTAGAAGCCTTCAATGGCTTCGATCGTATTCACATCATCGATTTCGACATTGGTTACGGTGGCCAATGGGCTTCTCTAATGCAAGAACTTGCTTTGAGAAGTAACACCACTGGAGGAGGACCCCCATTTCTCAGAATCACTGCCTTTGCTTCTACTTCCACACACGATGATTTCGAGCTCGGTTTCACTCAAGAAAACCTCAAGAATTTCGCAAACGATCTCAACATTGGATTCGAGCTCGAAGTCGTAAATGTAGAGTGTCTGAATTCTGGGTCTTGGCCTCTGCCACTCAATGTCTCTGAAGATGAAGCAATTGCAGTGAATCTCCCTGTGGGTTCATTCTTCAATTACTCACTTTCATTGCCAATGATTCTCCGTTTCATAAAACATCTTAACCCCAAAATCGTAGTGTCTGTGGATCGAGGTTGTAGCCGTATGGACGCGCCATTCCCACATCGAGTAATCAACGCTCTTCATTCATACTCTGCTTTGCTTGAATCCATGGAAGCTGTAACTATGAATATGGATACCCAATTGAAAATTGAAAGGTACTTGGTGCAACCATGTATTGAGAAAGTGGTAACAAATCCTCAATGTTCAAACGAAAGGGTTCCTCCATGGAAATCAGTGTTCTTATCATCTGGGTTTTGTCCATTGACATTCAGTAATTTCACGGAATCACAGGCAGAGTGTCTGCTGCAGCGGACGCCGGTTCAAGGATTTCATATCGACAAGAGACACTCCTCGCTTGTTCTTTGCTGGCATCGGAAGGAGCTCGTTTCAATCTCTGCTTGGAGGTCTTAA 2517 46.96 MSNSKGKLNSCNIFIKVPEDYRREEKEAQRKYSINRERERRKGERNRNPQANSSASSNRRTRRRKKEGRRKKAFEFQTFQTQRKRSQPSISIFDPTLEDFEKISELRPNGVLNFTSISDSPLPPTLLRRHNLRENWSCTDNTNLLKEICYVGAAEPTSVLDTRRSPSPPTSTSTLSSSLGGGGGGGGGTASTDTTVAAPPSSLPENPSPLDKCGGGGGLGIDDWESVLPESPGQGPSILGLIMSDVEDPSLGLNKLLQSGGGGGGGGGSHLDLEFSVDHGLVFEANTLAGESIVDPSLQGPSCSDFHNARLAAAVSNSNAMFSGVFQNQNQMVEGVDEKPQIFNSSQVVMNQNQTQFTQNPALFMPLPYASPVQDHHQNHHHHHLLGGAPPAKRFNSGSIGPNYPVKSPFLDSGQENFNRRQQQQQPQQVQLFPHHSHHHNLPQQQQRPSMAALAKQKMVNEDIANQQLQQGISDQLFKAVELIETGNSVLAQGILARLNHQLSSPIGKPFQRAAFYFKEALQLLLQNPSNPSTNPNPSPFSIIFKIAAYKSFSEVSPVLQFANFTSNQALLEAFNGFDRIHIIDFDIGYGGQWASLMQELALRSNTTGGGPPFLRITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEVVNVECLNSGSWPLPLNVSEDEAIAVNLPVGSFFNYSLSLPMILRFIKHLNPKIVVSVDRGCSRMDAPFPHRVINALHSYSALLESMEAVTMNMDTQLKIERYLVQPCIEKVVTNPQCSNERVPPWKSVFLSSGFCPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWRS 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4553384 4558698 - CrPI670011_06g010690.1 Cre06g1069 500531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1069 838 MobiDBLite consensus disorder prediction 160 180 - -
Cre06g1069 838 MobiDBLite consensus disorder prediction 19 72 - -
Cre06g1069 838 Pfam GRAS domain family 475 837 IPR005202 -
Cre06g1069 838 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 444 836 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre06g1069 838 ProSiteProfiles GRAS family profile. 464 837 IPR005202 -
Cre06g1069 838 MobiDBLite consensus disorder prediction 19 47 - -
Cre06g1069 838 MobiDBLite consensus disorder prediction 159 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1069 K27747 - - csv:101214718 1259.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1069 Cre-Chr6:4553384 Cre10g0519 Cre-Chr10:4433417 8.20E-138 dispersed
Cre06g1069 Cre-Chr6:4553384 Cre07g1266 Cre-Chr7:26588233 1.60E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g419 Blo01g00283 Blo12g00171 Bda03g01059 . Bpe14g01018 . Bma04g00970 Bma05g01129 . Cmo17g00454 Cma06g00779 . Car06g00693 . . . . . . . . . . . . . . . . . . Cone14ag0524 Cone15ag0550 Cone11ag0588 Cone18ag0922 . Csa06g00917 Chy11g01699 . Blo02g00395 . Bda11g00430 Bda13g00312 . . Bma02g01017 Bma06g01388 . Cmo06g00799 . . Cma17g00480 . Car17g00447 . Cpe12g00413 Bhi12g02129 . . Lac12g1443 Hepe03g0643 . Lcy13g0936 Cla06g00286 Cam06g0310 Cec06g0313 Cco06g0311 Clacu06g0300 Cmu06g0299 Cre06g1069 Lsi09g01628 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g2227 . 74 740 GRAS Transcription Factor Family AT2G37650 54.3 3.1e-194 675.6
Cre03g0450 . 314 696 GRAS Transcription Factor Family AT3G46600 56.7 3.6e-126 449.1
Cre04g1365 . 50 468 GRAS Transcription Factor Family AT3G49950 60.2 2.4e-135 479.2
Cre10g0519 . 490 859 GRAS Transcription Factor Family AT3G60630 51.0 2.3e-92 337.0
Cre07g1453 . 21 443 GRAS Transcription Factor Family AT5G41920 64.8 3.6e-147 518.5
Cre07g1288 . 1 608 GRAS Transcription Factor Family AT5G66770 57.4 1.2e-172 603.6
Cre04g1560 . 160 728 GRAS Transcription Factor Family AT5G66770 54.6 8.5e-150 527.7
Cre10g0686 . 45 544 GRAS Transcription Factor Family AT1G50600 58.5 8.7e-162 567.4
Cre02g1271 . 57 532 GRAS Transcription Factor Family AT1G50600 58.0 5.3e-151 531.6
Cre04g1759 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 1.5e-142 503.4
Cre10g0621 . 1 634 GRAS Transcription Factor Family AT1G63100 50.7 6.8e-164 574.7
Cre09g1895 . 44 581 GRAS Transcription Factor Family AT1G14920 67.7 1.3e-205 713.0
Cre03g1154 . 47 596 GRAS Transcription Factor Family AT1G14920 62.0 4.8e-184 641.3
Cre05g1321 . 32 555 GRAS Transcription Factor Family AT1G14920 56.5 1.3e-157 553.5
Cre10g0600 . 34 400 GRAS Transcription Factor Family AT1G55580 51.6 2.0e-103 373.2
Cre03g1154 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 4.2e-177 618.2
Cre09g1895 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.1e-172 603.6
Cre05g1321 . 1 554 GRAS Transcription Factor Family AT1G66350 56.0 8.5e-162 567.4
Cre02g2309 . 251 771 GRAS Transcription Factor Family AT1G07520 50.7 7.7e-142 501.1
Cre02g1271 . 19 532 GRAS Transcription Factor Family AT5G48150 63.3 9.6e-179 623.6
Cre10g0686 . 17 544 GRAS Transcription Factor Family AT5G48150 59.2 1.4e-174 609.8
Cre04g1759 . 16 548 GRAS Transcription Factor Family AT5G48150 52.0 1.7e-151 533.1
Cre09g1895 . 46 578 GRAS Transcription Factor Family AT2G01570 68.6 1.7e-211 732.6
Cre03g1154 . 48 594 GRAS Transcription Factor Family AT2G01570 63.1 1.2e-188 656.8
Cre05g1321 . 31 555 GRAS Transcription Factor Family AT2G01570 58.4 8.8e-163 570.9
Cre03g1154 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 4.2e-177 618.2
Cre09g1895 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.1e-172 603.6
Cre05g1321 . 1 554 GRAS Transcription Factor Family AT1G66350 56.0 8.5e-162 567.4
Cre03g1154 . 48 594 GRAS Transcription Factor Family AT3G03450 62.6 2.4e-178 622.5
Cre09g1895 . 10 578 GRAS Transcription Factor Family AT3G03450 58.2 2.8e-171 599.0
Cre05g1321 . 31 555 GRAS Transcription Factor Family AT3G03450 58.5 2.2e-160 562.8
Cre03g1154 . 47 596 GRAS Transcription Factor Family AT5G17490 56.4 2.6e-158 555.8
Cre09g1895 . 42 578 GRAS Transcription Factor Family AT5G17490 57.3 2.7e-155 545.8
Cre05g1321 . 28 555 GRAS Transcription Factor Family AT5G17490 53.1 4.6e-139 491.9
Cre09g0930 . 1 570 GRAS Transcription Factor Family AT1G21450 57.6 1.3e-174 610.1
Cre10g0686 . 168 544 GRAS Transcription Factor Family AT1G21450 52.9 1.8e-115 413.7
Cre03g0450 . 322 696 GRAS Transcription Factor Family AT5G59450 56.7 5.6e-128 455.3
Cre10g2227 . 369 740 GRAS Transcription Factor Family AT5G59450 54.1 2.1e-114 410.2
Cre04g1759 . 1 548 GRAS Transcription Factor Family AT4G17230 58.4 3.7e-176 615.1
Cre10g0686 . 60 544 GRAS Transcription Factor Family AT4G17230 52.2 3.1e-135 479.2
Cre02g1271 . 134 532 GRAS Transcription Factor Family AT2G04890 64.4 2.1e-147 519.2
Cre10g0686 . 166 544 GRAS Transcription Factor Family AT2G04890 62.5 1.6e-142 503.1
Cre04g1759 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 3.0e-125 445.7
Cre03g1575 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 6.1e-178 620.9
Cre05g2260 . 49 469 GRAS Transcription Factor Family AT1G50420 60.2 4.7e-138 488.4
Cre06g1069 . 472 837 GRAS Transcription Factor Family AT4G00150 60.2 5.5e-122 435.3
Cre10g0519 . 496 859 GRAS Transcription Factor Family AT4G00150 55.4 3.0e-104 376.3
Cre07g1288 . 1 608 GRAS Transcription Factor Family AT3G50650 52.1 1.5e-148 523.5
Cre07g1453 . 73 441 GRAS Transcription Factor Family AT3G54220 64.0 8.6e-135 478.0
Cre04g1376 . 104 495 GRAS Transcription Factor Family AT4G37650 67.8 1.0e-157 553.9
Cre02g1577 . 106 496 GRAS Transcription Factor Family AT4G37650 56.4 4.7e-123 438.7
Cre06g0871 . 64 455 GRAS Transcription Factor Family AT4G37650 50.7 1.2e-110 397.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003451 3 1 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53850 PF03514 GRAS 3.50E-98 CL0063 Cre TF