Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1109 ATGGAGTCCAGTTCTTTTGATCAGAACATCAGGGGTGTGCCCACCCATGGTGGTCGATACATTCAATACAATGTGTATGGGAATCTATTTGAAGTTCCTAGGAAGTATACTCCACCCATAAGGCCAGTTGGGAGAGGAGCTTATGGAATTGTATGTGCTGCTTTGAACTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGAATTGATGCTAAAAGGACCTTACGAGAAATCAAGCTTCTTCGACACATGGATCATGAAAATATCATTGCTCTCAAAGATATTATAAGACCTCCTCAAAAGGAGAATTTCAATGATGTATACCTTGTTTATGAATTGATGGATACGGATCTAAATCAGATAATACGGTCCAACCAATCGTTGACTGATGACCATTGCCGGTTCTTTCTGTACCAGTTGTTACGAGGGCTAAAATATGTACATTCTGCTAATGTTCTACACCGTGATTTGAAACCAAGCAATTTGTTCCTCAATGCAAATTGTGACCTAAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACTGATTTTATGACCGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAATTGCTTCTTAATTGCTCAGAATACACTGGAGCAATCGATATCTGGTCTGTTGGCTGTATACTTGGTGAAATTATTCACAGACAACCATTGTTTCCTGGAAGAGACTATGTCCATCAGCTAAAACTTATTACTGAGCTCATTGGTTCACCCGATGACTCGAGTCTCGGATTCTTACGAAGTGACAATCCACGAAGATATTTTAGACATCTTCCTCACTTCCCCAAGCAACAGTTTTCCACTAGATTTCCCACCATGTCTCCTGCTGCTATTGACTTGCTGGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTTGAGGAGGCTCTATGCCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCAGTATGTCCAAGGCCTTTCAGTTTTGATTTCGAGCAACCATCGTATACCGAAGAGAACATCAAGGAACTTGTATGGAGAGAATCTGTGAAGTTCAACCCCGATCCCGCTTTTTGA 1113 41.24 MESSSFDQNIRGVPTHGGRYIQYNVYGNLFEVPRKYTPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENIIALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQSLTDDHCRFFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIIHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRHLPHFPKQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVEEALCHPYLAPLHDINEEPVCPRPFSFDFEQPSYTEENIKELVWRESVKFNPDPAF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4984382 4988636 + CrPI670011_06g011090.1 Cre06g1109 500571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1109 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Cre06g1109 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1109 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1109 370 CDD STKc_TEY_MAPK 30 366 - -
Cre06g1109 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Cre06g1109 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1109 370 SMART serkin_6 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1109 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 359 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cre06g1109 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Cre06g1109 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524(InterPro)
Cre06g1109 370 FunFam Mitogen-activated protein kinase 22 131 - -
Cre06g1109 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1109 370 FunFam Mitogen-activated protein kinase 121 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0521 Cre-Chr3:3788070 Cre06g1109 Cre-Chr6:4984382 1.00E-167 dispersed
Cre06g1109 Cre-Chr6:4984382 Cre08g0956 Cre-Chr8:22718362 1.80E-161 dispersed
Cre08g1426 Cre-Chr8:27224856 Cre06g1109 Cre-Chr6:4984382 1.10E-115 transposed
Cre06g1109 Cre-Chr6:4984382 Cre09g2280 Cre-Chr9:42001456 1.40E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64196 PF00069 Pkinase 2.10E-71 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1109 K20600 - csv:101215189 734.176