Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1115 ATGGCTTCTTTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTTTTCCTCTTCGTTTCTCTGCCATCTCTCTCCTTCTCCATCTCGAAAGATGAAGCTTCGTATCTCACTCATCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCTAAACATGACAGCCAATTGGGTTGGCGCTGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACGACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATTCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACCGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCTATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTTGATGCGAGCGCCAATGGCTTCGTGGGCCAGCTGCCCGAAACCTTATCGAGCCTCCAAAATTTGGAGATTATGGACATTAGCAACAATGAATTGAGGGGCTTTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGGAACTAAAGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGCCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCGGGTTCTCCCGAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCACAATCGATCGACACCTCGGTCCCAGAAGTGGAGACTCCTCCTGCCCCATCATTGTCACCAACCTCTGCTCCATTCTCACCACCTAAACTTGAAACCCCCAGTCCATCCCCAGCTGACTCTCTCGAACCACCAGTTCACTCACCACCACCCCTAGTCCATTCCCCACCACCACCGGTCCATTCTCCTCCTCTACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCAACTCCCCACCACCCCCTGTTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTTCACTCTCCACCACCACCGGTCCACTCCCCACCTCCACCAGTCCACTCCCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCTACTCACCACCACCCCCCGTCCACTCTCCACCCCCACCAGTTCATTCTCCACCTCCTCCTGTTCACTCTCCACCACCACCGATCCACTCCCCACCTCCACCGGTCCACTCACCACCACCCCCCGTCCAGTCTCCACCCCCACCAGTTCATTCTCCACCTCCTCCTGTTCACTCTCCACCACCCCCGGTCCACTCCCCACCACCCCCAGTCCACTCTCCACCACCCCCAGTCCACTCTCCACCCCCACCAGTTTACTCCCCACCTCCACCAGTCCACTCTCCACCACCAGTACACTCCCCACCCCCACCGGTTCATTCTCCACCGCCACCGGTTCATTCTCCACCGCCACCATTCTACTACCCACCGCCACCTGTCCATTCTCCACCGCCACCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCTCCCGATTCTTCTCCACCGCCAACATTCGAGGATGTCATCCTCCCACCAAATATCGGCTTCCAATACACATCACCACCTCCACCACAGTTTCCTGGCTATTAA 2262 52.43 MASFHRKQANHACFLLLFLFVSLPSLSFSISKDEASYLTHRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPLNMTANWVGADVCSYTGIYCTTALDDSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFYGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFVGQLPETLSSLQNLEIMDISNNELRGFVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLPNQPEQKDANKCSVVLKKSVDCGNCGGGGSGSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPQSIDTSVPEVETPPAPSLSPTSAPFSPPKLETPSPSPADSLEPPVHSPPPLVHSPPPPVHSPPLPVHSPPPPVHSPPPPVNSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPVHSPPPPVHSPPPPVHSPPPPFYYPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPDSSPPPTFEDVILPPNIGFQYTSPPPPQFPGY 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5052916 5055177 - CrPI670011_06g011150.1 Cre06g1115 500577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1115 753 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cre06g1115 753 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 750 IPR051582 -
Cre06g1115 753 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cre06g1115 753 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cre06g1115 753 MobiDBLite consensus disorder prediction 397 753 - -
Cre06g1115 753 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cre06g1115 753 MobiDBLite consensus disorder prediction 444 732 - -
Cre06g1115 753 MobiDBLite consensus disorder prediction 409 432 - -
Cre06g1115 753 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 327 - -
Cre06g1115 753 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cre06g1115 753 PRINTS Proline rich extensin signature 471 488 - -
Cre06g1115 753 PRINTS Proline rich extensin signature 489 514 - -
Cre06g1115 753 PRINTS Proline rich extensin signature 453 469 - -
Cre06g1115 753 PRINTS Proline rich extensin signature 414 426 - -
Cre06g1115 753 PRINTS Proline rich extensin signature 426 447 - -
Cre06g1115 753 SUPERFAMILY L domain-like 83 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1115 Cre-Chr6:5052916 Cre06g1119 Cre-Chr6:5071901 7.10E-08 dispersed
Cre06g1115 Cre-Chr6:5052916 Cre06g1116 Cre-Chr6:5060541 7.10E-08 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1115 - - - 0.0