Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1116 ATGGCTTCTTTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTTTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCGGAAGCGGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCTAAACATGACAGCCAATTGGGTTGGCGCTGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACGACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATTCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACCGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTTGATGCGAGCGCCAATGGCTTCGTGGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTTTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGGAACTAAAGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCGACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTATCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCGGGTTCTCCCGAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAGACTTCTATTACATCATCACCACCGTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATCATTATCACCAACCTCCGCTTCGATCTCACCACCTACCCTAGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACCACCAATTCATTCACCACCACCCCCAGTCCATTCTCCGCCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCTATTTACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCCGTCCACTCACCACCACCCCCTGTCCACTCTCCACCACCCCCCGTCCACTCACCACCACCACCCGTCCACTCCCCACCACCACCGGTCCACTCACCACCACCCCCCGTCCACTCTCCCCCACCCCCCGTCCACTCACCACCACCACCCGTCCACTCTCCACCCCCACCAGTTTACTCCCCACCCCCACCTGTTCCTTCTCCACCCCCACCGGTTCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCGACTTCATCTCCTCCTCCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTCCAATACGCATCACCACCTCCACCACAGTTTCCTGGCTATTGA 2232 52.33 MASFHRKQANHACFLLLFLFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPLNMTANWVGADVCSYTGIYCTTALDDSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFVGQLPETLSGLQNLEIMDVSNNELRGFVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANRPEQKDANKCSVILKKSVDCGNCGGGGSGSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIDTSVPEVGTPPSPSETSITSSPPSPIEYSPPTSAPQLSPTSAPSLSPTSASISPPTLETPSPSPAESPEPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIYSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVPSPPPPVHSPPPPVHSPPPPVYSPPPPVQSPPPPTSSPPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5060541 5062772 + CrPI670011_06g011160.1 Cre06g1116 500578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1116 743 MobiDBLite consensus disorder prediction 397 743 - -
Cre06g1116 743 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cre06g1116 743 MobiDBLite consensus disorder prediction 491 722 - -
Cre06g1116 743 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 328 - -
Cre06g1116 743 MobiDBLite consensus disorder prediction 433 457 - -
Cre06g1116 743 Gene3D Ribonuclease Inhibitor 237 352 IPR032675 -
Cre06g1116 743 MobiDBLite consensus disorder prediction 467 490 - -
Cre06g1116 743 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 740 IPR051582 -
Cre06g1116 743 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cre06g1116 743 MobiDBLite consensus disorder prediction 409 432 - -
Cre06g1116 743 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cre06g1116 743 SUPERFAMILY L domain-like 83 348 - -
Cre06g1116 743 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1116 Cre-Chr6:5060541 Cre06g1119 Cre-Chr6:5071901 8.30E-09 dispersed
Cre06g1115 Cre-Chr6:5052916 Cre06g1116 Cre-Chr6:5060541 7.10E-08 tandem
Cre06g1116 Cre-Chr6:5060541 Cre06g1117 Cre-Chr6:5064457 2.70E-31 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1116 - - - 0.0