Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1119 ATGGCTTCTTTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTTTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCGGAAGCGGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACCAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATTCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACTGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTTGATGCGAGCGCCAATGGCTTCGTGGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTTTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGGAACTAAAGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCGACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTATCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCGGGTTCTCCCGAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAGACTTCTATTACATCATCACCACCGTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATCATTATCACCAACCTCCGCTTCGATCTCACCACCTACCCTAGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACCACCAATTCATTCACCACCACCCCCAGTCCATTCCCCGCCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTTCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCTATTTACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTCCACTCTCCACCACCCCCCGTCCACTCACCACCACCACCCGTCCACTCACCACCACCACCCGTTTACTCCCCACCCCCACCAGTTCATTCTCCACCCCCACCAATTCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTCCAATACGCATCACCACCTCCACCACAGTTTCCTGGCTATTGA 2130 51.31 MASFHRKQANHACFLLLFLFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYQYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFVGQLPETLSGLQNLEIMDVSNNELRGFVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANRPEQKDANKCSVILKKSVDCGNCGGGGSGSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIDTSVPEVGTPPSPSETSITSSPPSPIEYSPPTSAPQLSPTSAPSLSPTSASISPPTLETPSPSPAESPEPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIYSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPIHSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5071901 5074030 + CrPI670011_06g011190.1 Cre06g1119 500581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1119 709 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 706 IPR051582 -
Cre06g1119 709 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cre06g1119 709 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cre06g1119 709 SUPERFAMILY L domain-like 83 348 - -
Cre06g1119 709 FunFam Leucine-rich repeat extensin-like protein 1 75 235 - -
Cre06g1119 709 MobiDBLite consensus disorder prediction 433 457 - -
Cre06g1119 709 MobiDBLite consensus disorder prediction 397 709 - -
Cre06g1119 709 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cre06g1119 709 MobiDBLite consensus disorder prediction 467 490 - -
Cre06g1119 709 MobiDBLite consensus disorder prediction 409 432 - -
Cre06g1119 709 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cre06g1119 709 FunFam Leucine-rich repeat receptor protein kinase EMS1 236 328 - -
Cre06g1119 709 MobiDBLite consensus disorder prediction 491 688 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1119 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1115 Cre-Chr6:5052916 Cre06g1119 Cre-Chr6:5071901 7.10E-08 dispersed
Cre06g1116 Cre-Chr6:5060541 Cre06g1119 Cre-Chr6:5071901 8.30E-09 dispersed
Cre06g1119 Cre-Chr6:5071901 Cre06g1872 Cre-Chr6:25183274 3.00E-40 dispersed
Cre06g1119 Cre-Chr6:5071901 Cre06g1120 Cre-Chr6:5075542 7.90E-09 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0603 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.1 2.1e-47 188.0
Cre11g0739 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.2e-42 172.2
Cre07g0603 . 52 378 Leucine-rich Repeat extension Gene Families AT1G62440 58.7 3.5e-42 170.6
Cre06g1872 . 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.2 1.5e-40 165.2
Cre11g0739 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 5.3e-67 253.1
Cre06g1872 . 15 402 Leucine-rich Repeat extension Gene Families AT4G13340 74.6 6.9e-67 252.7
Cre05g0603 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 71.3 3.2e-56 217.2
Cre07g0603 . 51 379 Leucine-rich Repeat extension Gene Families AT4G13340 62.7 1.0e-41 169.1
Cre06g1120 . 21 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.1 1.6e-39 161.8
Cre06g1119 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.0 4.6e-39 160.2
Cre06g1116 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.0 1.3e-38 158.7
Cre06g1115 . 22 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.9 8.7e-38 156.0
Cre06g1872 . 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 2.7e-72 270.0
Cre11g0739 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 7.9e-72 268.5
Cre05g0603 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 68.4 1.1e-54 211.5
Cre07g0603 . 51 400 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 1.2e-43 174.9
Cre06g1120 . 25 393 Leucine-rich Repeat extension Gene Families AT3G24480 51.7 2.7e-40 163.7
Cre06g1119 . 25 393 Leucine-rich Repeat extension Gene Families AT3G24480 50.1 7.9e-40 162.2
Cre05g0603 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 71.6 4.5e-69 259.2
Cre07g0603 . 51 378 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 6.8e-49 192.2
Cre06g1872 . 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 2.7e-37 153.7
Cre06g1872 . 47 402 Leucine-rich Repeat extension Gene Families AT5G25550 60.5 5.9e-39 159.1
Cre11g0739 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.3e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92