Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1119 ATGGCTTCTTTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTTTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCGGAAGCGGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACCAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATTCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACTGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTTGATGCGAGCGCCAATGGCTTCGTGGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTTTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGGAACTAAAGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCGACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTATCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCGGGTTCTCCCGAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAGACTTCTATTACATCATCACCACCGTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATCATTATCACCAACCTCCGCTTCGATCTCACCACCTACCCTAGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACCACCAATTCATTCACCACCACCCCCAGTCCATTCCCCGCCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTTCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCTATTTACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTCCACTCTCCACCACCCCCCGTCCACTCACCACCACCACCCGTCCACTCACCACCACCACCCGTTTACTCCCCACCCCCACCAGTTCATTCTCCACCCCCACCAATTCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTCCAATACGCATCACCACCTCCACCACAGTTTCCTGGCTATTGA 2130 51.31 MASFHRKQANHACFLLLFLFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYQYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFVGQLPETLSGLQNLEIMDVSNNELRGFVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANRPEQKDANKCSVILKKSVDCGNCGGGGSGSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIDTSVPEVGTPPSPSETSITSSPPSPIEYSPPTSAPQLSPTSAPSLSPTSASISPPTLETPSPSPAESPEPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIYSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPIHSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5071901 5074030 + CrPI670011_06g011190.1 Cre06g1119 500581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1119 709 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 706 IPR051582 -
Cre06g1119 709 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cre06g1119 709 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cre06g1119 709 SUPERFAMILY L domain-like 83 348 - -
Cre06g1119 709 FunFam Leucine-rich repeat extensin-like protein 1 75 235 - -
Cre06g1119 709 MobiDBLite consensus disorder prediction 433 457 - -
Cre06g1119 709 MobiDBLite consensus disorder prediction 397 709 - -
Cre06g1119 709 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cre06g1119 709 MobiDBLite consensus disorder prediction 467 490 - -
Cre06g1119 709 MobiDBLite consensus disorder prediction 409 432 - -
Cre06g1119 709 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cre06g1119 709 FunFam Leucine-rich repeat receptor protein kinase EMS1 236 328 - -
Cre06g1119 709 MobiDBLite consensus disorder prediction 491 688 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1115 Cre-Chr6:5052916 Cre06g1119 Cre-Chr6:5071901 7.10E-08 dispersed
Cre06g1116 Cre-Chr6:5060541 Cre06g1119 Cre-Chr6:5071901 8.30E-09 dispersed
Cre06g1119 Cre-Chr6:5071901 Cre06g1872 Cre-Chr6:25183274 3.00E-40 dispersed
Cre06g1119 Cre-Chr6:5071901 Cre06g1120 Cre-Chr6:5075542 7.90E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1119 - - - 0.0