Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1120 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTCTTTTTGTCTCTGCCATCTCTCTCCATCTCCATCTCGGAAGTCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTCCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAGTCCCCTCCACCCTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGGTTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACCGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTTATCGGCAACAAGCTCGACGGCTGTTTTCCACCCGAGATCGGAAACCTCGTTAATCTTACGGTCTTCGATGCGAGTGCCAATGGCTTCATCGGCCAGCTACCTGAAACCTTATATGGCCTCCAAAATCTTGAGATTATGGACATTAGCAACAATGAATTGAGGGGCTCTATTCCTGGAGGCCTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCTTTTAATTATTTTGATGGTGAAGATGCAGTGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCGACCGGAGCAGAAAGATGCAAACAAATGTAGCATTGTCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCGGGTTCTCCTGGAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCATATCACCAGTTCATTCACCACCACCTCCCGTTCATTCACCACCACCCCCAGTCCATTCCCCACCACCACCGATTCATTCTCCTCCACCACCAGTTCATTCCCCACCACCTCCTGTCAACTCTCCTCCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCGCCAGTCCACTCCCCTCCACCTCCTGTTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCACTCCCCACCTCCACCTGTCTACTCTCCACCACCACCGGTCCACTCCCCACCTCCACCGCTCCATTCTCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCCACTCCCCACCCCCACCAGTCTATTCTCCACCGCCACCGGTCTACTCCCCACCACCCCCGGTCCATTCTCCACCAACTCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCTCTCGATTCTTCTCCACCGCCATCATTCGAGGACATCATCCTCCCCCCAAATATTGGCTTCCAATATGCATCACCACCTCCACCACAATTCCCTGGCTACTGA 1920 50.89 MASLHRKQANHACFLLLFLFLSLPSLSISISEVEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEVPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLDGCFPPEIGNLVNLTVFDASANGFIGQLPETLYGLQNLEIMDISNNELRGSIPGGLCKLPKLANFTFSFNYFDGEDAVCVGTKGSEKLFDDAQNCLANRPEQKDANKCSIVLKKSVDCGNCGGGGSGSPGVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIISPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVNSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVYSPPPPVHSPPPPLHSPPPPVHSPPPPVHSPPPPVYSPPPPVYSPPPPVHSPPTPVYSPPPPVQSPPPPTASPPPPPLDSSPPPSFEDIILPPNIGFQYASPPPPQFPGY 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5075542 5077461 + CrPI670011_06g011200.1 Cre06g1120 500582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1120 639 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cre06g1120 639 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cre06g1120 639 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cre06g1120 639 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cre06g1120 639 PRINTS Proline rich extensin signature 437 453 - -
Cre06g1120 639 PRINTS Proline rich extensin signature 406 427 - -
Cre06g1120 639 PRINTS Proline rich extensin signature 454 471 - -
Cre06g1120 639 PRINTS Proline rich extensin signature 472 497 - -
Cre06g1120 639 SUPERFAMILY L domain-like 83 349 - -
Cre06g1120 639 MobiDBLite consensus disorder prediction 397 639 - -
Cre06g1120 639 Gene3D Ribonuclease Inhibitor 237 352 IPR032675 -
Cre06g1120 639 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 530 IPR051582 -
Cre06g1120 639 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cre06g1120 639 MobiDBLite consensus disorder prediction 409 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1117 Cre-Chr6:5064457 Cre06g1120 Cre-Chr6:5075542 5.40E-33 dispersed
Cre06g1120 Cre-Chr6:5075542 Cre06g1872 Cre-Chr6:25183274 6.00E-40 dispersed
Cre06g1119 Cre-Chr6:5071901 Cre06g1120 Cre-Chr6:5075542 7.90E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1120 - - - 0.0