Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1146 ATGGATCGAAGGGATCCGATGGCTTTATCGGGGTCGCAATCTTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGAAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGGGCTCAATCTGGTGGAGTAGTTGCCAGTGAGCCTGTGAAACGCAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCTTCTGCTGTAAACCCAGCCACTGTAGCTTCTTCCCCAAAGCGGGGAAGGGGACGGCCTCCCGGCTCTGGAAAGAAGCAACAAATGGCTTCTCTTTGTGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGGTGCCAAGATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTTACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATATGAGGGGCGTTTCGAGATAATATGTCTGTCGGGCTCTTATGCTCTTGGAGAAGTTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCTAGCCCTGATGGGCGCGTTATCGGCGGTGGAGTAGGAGGAGCGCTTATTGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGTTTCATGTGGGGCAGTTCGAAGTCAAAGTACAAGAAGAGGGAAGCTGTTGAAGGCGTGATCGACTCGGATCATCAGTCGGTAGATCATGCAGTTGCAATCGCAAACGTGCAGCAGAATCAGAATCTGACTCCAACGTCCTCAGTTAGCATGTGGCCATCCTCGCAGTCTCTGGACATGCGCAATGCTCACATTGACATCGATCTGATGCGCGGTTGA 1005 51.54 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKRGRGRPPGSGKKQQMASLCETLSGSAGMGFTPHVITIGIGEDVGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEVAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQSVDHAVAIANVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5322030 5325294 + CrPI670011_06g011460.1 Cre06g1146 500608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1146 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Cre06g1146 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Cre06g1146 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 317 IPR039605 GO:0003680(InterPro)
Cre06g1146 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Cre06g1146 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Cre06g1146 334 CDD DUF296 150 264 IPR005175 -
Cre06g1146 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Cre06g1146 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Cre06g1146 334 Gene3D - 151 283 - -
Cre06g1146 334 MobiDBLite consensus disorder prediction 11 52 - -
Cre06g1146 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Cre06g1146 334 MobiDBLite consensus disorder prediction 98 114 - -
Cre06g1146 334 MobiDBLite consensus disorder prediction 1 135 - -
Cre06g1146 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1146 Cre-Chr6:5322030 Cre08g0864 Cre-Chr8:21782933 5.00E-62 dispersed
Cre11g2294 Cre-Chr11:34578089 Cre06g1146 Cre-Chr6:5322030 2.20E-52 transposed
Cre06g1146 Cre-Chr6:5322030 Cre09g2242 Cre-Chr9:41595614 1.10E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1146 - - - 0.0