Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1179 ATGAAGCTAAGAAAAATGCGAGTGGGAAAGTACGAGCTTGGAAAAACTCTGGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTAATTTCGAAACTCACCAACCCTTTGCTGTCAAAGAAGTTGATAAGATCAAGATTATCCATCTTAATATCACCCATCAGTTTAAAAGGGAAATACAAACTCTCAAACTTCTCAAGCATCCAAATATAGTGAGGCTACATGAGGTTTTGGCTAGTAAAAGCAAAATTTACATGGTTCTCGAGTACGTTAACGGCGAAGAATTATTTGATACAATCGCATCAAAGGGGAAGCTATCAGAAGCTCAAGGCAGAAAAATCTTCCAACAATTACTTGATGGTGTGAGTTACTGCCATAGGAAAGGCGTTTACCATAGAGATCTCAAGTTGGAGAACATACTTGTTGATGCCATGGGAAATGTTAAGATAACTGACTTTGGCTTAAGTGCTTTACCTGAGCATTTTAGGGACGATGGTTTGCTTCACACTACCTGTGGAAGCCCAAATTACGTAGCACCAGAAATTCTTGCTAACAGAGGGTATGATGGTGCTGCCTCAGATATTTGGTCTTGTGGTGTTATCCTGTTTGTAATTCTAACAGGATCTCTTCCTTTCGATGATAGAAATCTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCAGCTACCAAAGTGGTTGTCACAAGGAGCCCAAAATTTGATAAGAAGGATTCTTGATCCCAACCCTATTTCTAGAATAACTATGGCATCCATCAAAATGGATGATTGGTTTAGAACAGACTATCATCCAGCCTACCTTGATGATGAAGAAGAAGATATATACACTAGTGAAGCTATGGCCTTCCCAATGCATCAAGTGAGTTCAGAGTCTTCCACTACTATAAATGCTTTTCAACTAATTGGAATGTTCTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGGAAGATTAGATTTACAACCAATCACTCTACAAAAGAAGATATCCTCAACCGGATGGATGATCTTGTAACCAATATGGGGTTTCTTGTCCAGAAGAAACAAGGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTGTGTCCACCATACTTTCTGTATCGGCAGAGGTTTTTGAGATAAGTCCATCACTATACGTTGTAGAATTAAGAAAGTTGCATGGAGATTCATCTTCATATAGACAGTTGTGTAATATATTATCTAGTGATTTGGGTGTCCCCTCCAACCAAGACTCGGTGATGGCATAG 1296 38.97 MKLRKMRVGKYELGKTLGHGNFGKVKFAINFETHQPFAVKEVDKIKIIHLNITHQFKREIQTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGEELFDTIASKGKLSEAQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILVDAMGNVKITDFGLSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIQLPKWLSQGAQNLIRRILDPNPISRITMASIKMDDWFRTDYHPAYLDDEEEDIYTSEAMAFPMHQVSSESSTTINAFQLIGMFSCLDLSGFFEKEDISERKIRFTTNHSTKEDILNRMDDLVTNMGFLVQKKQGRLKVMREEKGENGVSTILSVSAEVFEISPSLYVVELRKLHGDSSSYRQLCNILSSDLGVPSNQDSVMA 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5631596 5641289 + CrPI670011_06g011790.1 Cre06g1179 500641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1179 431 Pfam NAF domain 301 360 IPR004041 GO:0007165(InterPro)
Cre06g1179 431 Gene3D Kinase associated domain 1, KA1 297 422 - -
Cre06g1179 431 FunFam Non-specific serine/threonine protein kinase 4 304 - -
Cre06g1179 431 SUPERFAMILY Protein kinase-like (PK-like) 8 302 IPR011009 -
Cre06g1179 431 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cre06g1179 431 Gene3D Transferase(Phosphotransferase) domain 1 91 289 - -
Cre06g1179 431 FunFam Non-specific serine/threonine protein kinase 300 423 - -
Cre06g1179 431 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 410 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre06g1179 431 ProSiteProfiles Protein kinase domain profile. 11 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1179 431 Pfam Protein kinase domain 11 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1179 431 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Cre06g1179 431 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Cre06g1179 431 CDD CIPK_C 304 420 - -
Cre06g1179 431 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165(InterPro)
Cre06g1179 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1179 431 SMART serkin_6 11 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1179 Cre-Chr6:5631596 Cre06g2099 Cre-Chr6:28784355 2.00E-103 dispersed
Cre09g2208 Cre-Chr9:41224774 Cre06g1179 Cre-Chr6:5631596 1.00E-13 dispersed
Cre06g1179 Cre-Chr6:5631596 Cre06g1180 Cre-Chr6:5647520 5.10E-144 tandem
Cre05g0841 Cre-Chr5:7523041 Cre06g1179 Cre-Chr6:5631596 3.20E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64198 PF00069 Pkinase 2.70E-71 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1179 K07198 - csv:101206030 719.924