Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1181 ATGGCCAGCGGCTTGCAGATGAGTCCTCAGTTAGAGCAGATCCATGGGGAAATTCGTGACAATTTTCGGGCTCTTTCAAATGGGTTCCAAAGACTGGATAAGATCAAAGATTCCAGTAGACAAAGTAAGCAGTTGGAGGAGCTCACAGGAAAGATGAGGGAATGTAAAAGATTAATAAAAGATTTTGACCGTGAAATCAAGGAGGAAGAGAGTAAAAATCCACCGGAAGTGAATAAGCAGCTCAATGACGAGAAGCAATCAATGATCAAGGAGCTGAATTCATTTGTTGCATTGAGGAAAACGTATATGAATAGTCTTGGTAATAAAAGGGTTGAGCTATTTGATGAGGGAGGTGTAAGTGAACCTACAGCTGATGATAATGTTCGGATGGCCTCATCAATGACAAATCAAGAACTTATAGATGCTGGTAAGAAGACAATGGATGAAACCGATCAGGCTATTGAACGCACGCAAAAGGTGGTTGAACAAACTATTGAAGTGGGAACTCAAACTGCTGTTACATTAAAAGGCCAAACTGAGCAAATGGGCCGTATAGTAAATGAGCTTGACACAATTAATTTTTCAATTAAGAAGGCTTCCCAGCTTGTGAAAGAAATTGGCAGACAGGTTGCTACAGATAAATGCATCATGCTGTTTCTGTTCCTAATTGTCTGTGGAGTAATAGCCATTATTGTAGTTAAGATTGTGAACCCCAACAACAAAAACATCAGGGATATTCCTGGATTGGCACCTCCAGCTCCTGCAAGGAGGCTTTTGTATCTGAGGACACCTGAACATTTCGAGTAA 807 40.77 MASGLQMSPQLEQIHGEIRDNFRALSNGFQRLDKIKDSSRQSKQLEELTGKMRECKRLIKDFDREIKEEESKNPPEVNKQLNDEKQSMIKELNSFVALRKTYMNSLGNKRVELFDEGGVSEPTADDNVRMASSMTNQELIDAGKKTMDETDQAIERTQKVVEQTIEVGTQTAVTLKGQTEQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKNIRDIPGLAPPAPARRLLYLRTPEHFE 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5659170 5665995 + CrPI670011_06g011810.1 Cre06g1181 500643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1181 268 Pfam Sec20 152 229 IPR005606 GO:0005484(InterPro)|GO:0006890(InterPro)
Cre06g1181 268 Gene3D - 135 214 - -
Cre06g1181 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 144 206 IPR000727 -
Cre06g1181 268 Coils Coil 45 72 - -
Cre06g1181 268 CDD SNARE_SNAP25N_23N_29N_SEC9N 143 205 IPR044766 GO:0005484(InterPro)|GO:0031201(InterPro)
Cre06g1181 268 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 7 233 - GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005789(PANTHER)|GO:0005794(PANTHER)|GO:0006906(PANTHER)|GO:0012507(PANTHER)|GO:0031201(PANTHER)|GO:0031902(PANTHER)
Cre06g1181 268 SMART tSNARE_6 139 206 IPR000727 -
Cre06g1181 268 SUPERFAMILY SNARE fusion complex 134 207 - -
Cre06g1181 268 FunFam novel plant SNARE 11 135 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1181 K08494 - - csv:101206271 470.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1181 Cre-Chr6:5659170 Cre10g0462 Cre-Chr10:3645780 8.00E-87 dispersed
Cre06g1175 Cre-Chr6:5599943 Cre06g1181 Cre-Chr6:5659170 3.90E-25 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g255 Blo01g00024 Blo12g00374 Bda03g00835 . Bpe04g00791 . Bma04g00734 Bma05g00986 . . . . . . . . . . . . . . . . Cla06g00393 Cam06g0415 Cec06g0423 Cco06g0423 Clacu06g0402 Cmu06g0402 Cre06g1181 Cone14ag0681 Cone15ag0693 . . . . . . . . . . . . . . . . . . . . . Cpe12g00349 . Bhi12g01996 . . . Hepe03g0009 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001212 4 4 3 3 2 2 6 2 2 2 2 2 3 3 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 2 76