Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1182 ATGGCTCCTGATCTAAACACGACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGGATCCTGGTTGGGGTGTTTATTGTAATAGTCCTTGTAGTGCTATCAATATGTGTTACTTCACGAAGAAAATCTAGAAGGGTAAGTGGCATGCTTCCTCTCAACCGTATTTCCATTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTACACCAATCCAACAGGGTTCCCTCCCCCACGATGGATTCGACACAGAATCAGAAAAAGTTCTTCTATATTCAAACAAGGCATACAATTACAGTATATCAGGCTCAGTTGATCACACAGAGATATATGCTATTGGCTCTGGAGAAGGGAGCAAGGAAGCAAGTGTTTTGCAAAGACCCTCAGATTCAATACCACCGAATCCTTCGCCACTGGCTGGTCTGCCAGAATTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTTATCAATGGGACACCTGTAGCTGTCAAAAAGCTTTTAAGTTTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTAGAAGCATTTGGGCATGTGCGGCATAAGAACTTAGTACGGCTCCTGGGATACTGCATTGAAGGAACGCACAGGATACTAGTATATGAGTACGTGGATAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTCTATGTCAGCATGGATATCTCACTTGGGAAGCAAGAATCAAAATTCTCCTTGGTACTGCTAAGGCACTAGCATATTTGCATGAAGCAATCGAGCCAAAAATCGTCCATCGAGATATCAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAGCTATCAGACTTTGGGCTGGCCAAATTACTCGGTGCTGGGAAGAGCCACATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGGCTTCTAAATGAGAAGAGCGATGTTTATAGTTTTGGAGTGGTACTTTTGGAAGCAATTACTGGAAGAGACCCTGTTGATTATGGTCGCCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTCGGCAGCAAACGGTCAGAAGAGGTGGTAGATCCAAATATAGAGAGAAAGCCATCAATTAGTGAACTGAAGCGAGTTCTCTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTTCCCGCATGCTCGAGTCTGAAGAATATCCAATTCCTCGACAGGACCGGAGACCCAGAAAAAGCAATGCCATTGCGACCAAAATGGAGACTGAGAAACAGGAAAGAGGACCCAGACGACACAGATAA 1443 43.94 MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLNRISIASKEIKEIGVDHVTPIQQGSLPHDGFDTESEKVLLYSNKAYNYSISGSVDHTEIYAIGSGEGSKEASVLQRPSDSIPPNPSPLAGLPEFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLSLGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALCQHGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSISELKRVLLTALRCVDPDADKRPKMSQVSRMLESEEYPIPRQDRRPRKSNAIATKMETEKQERGPRRHR 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5674641 5677391 + CrPI670011_06g011820.1 Cre06g1182 500644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1182 480 ProSiteProfiles Protein kinase domain profile. 173 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1182 480 ProSitePatterns Protein kinases ATP-binding region signature. 179 202 IPR017441 GO:0005524(InterPro)
Cre06g1182 480 PANTHER OS01G0323000 PROTEIN 1 470 IPR052232 -
Cre06g1182 480 CDD STKc_IRAK 179 444 - -
Cre06g1182 480 Gene3D Phosphorylase Kinase; domain 1 154 247 - -
Cre06g1182 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1182 480 FunFam serine/threonine-protein kinase PBS1-like 150 247 - -
Cre06g1182 480 MobiDBLite consensus disorder prediction 447 480 - -
Cre06g1182 480 SUPERFAMILY Protein kinase-like (PK-like) 157 454 IPR011009 -
Cre06g1182 480 MobiDBLite consensus disorder prediction 430 480 - -
Cre06g1182 480 FunFam Putative receptor-like serine/threonine-protein kinase 248 459 - -
Cre06g1182 480 Pfam Protein kinase domain 175 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1182 480 SMART serkin_6 173 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1182 480 Gene3D Transferase(Phosphotransferase) domain 1 248 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0234 Cre-Chr1:1727677 Cre06g1182 Cre-Chr6:5674641 4.30E-150 dispersed
Cre02g2149 Cre-Chr2:35080213 Cre06g1182 Cre-Chr6:5674641 1.00E-145 dispersed
Cre06g1182 Cre-Chr6:5674641 Cre08g1550 Cre-Chr8:28157548 6.80E-129 dispersed
Cre02g1790 Cre-Chr2:31226386 Cre06g1182 Cre-Chr6:5674641 7.60E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64200 PF00069 Pkinase 4.20E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1182 - - - 0.0