Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1183 ATGGCTTCCTTCTCCTTCTCCTCGCTCCTTCCTTCTTCAGTTTCTTTCGATCATGGCTCCCCTTCCTTTTTTCCCATCTTTGTTTCATCTTCTTCACACTCCAATTCTCGCGTTGTTCGCTGTGCATTTGCAGCCCCCACTAGAAAATTCCCTCCTCCTCCTCCTTCTACTTCTTCTTCATTACCTGCTAAGAAGAAGCACTGGAAGCAAGGGGAATTTCCAGGAATTACAGAGACATCCGCCCCCAGGAAGAACCCTCTCAAGAATGTCAAAAAGAAATTAGACCGCAAGAACAATGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCCGACCATATCACGAATAAACGGTGGCTTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGGAGATCTGGCCAACCACATCGTGCCCGTCTGCTTTTTGACACAATGGTTGAAGAAAGATGTGAACCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCGTATTGTCGGAACAATCTCATTGATGATGCATTCTCCACTCTTAATCTCATGAAGACCCTCCCTGGCTGCCAACCTGATGTCTACACTTATAGTACCTTAATCAAGGCTTGTGTCGATGCTTCTCGCTTTGATATGGTCGAATCATTGTATGAGGAAATGGCCGAACGACTGATAACTCCAAATACAGTGACTCAGAACATAGTCTTAAGTGGATACGGCAAGATAGGGAAGTATGACCAAATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGCGTGTTTGGTAATAAGGGACAGATTGAAATGATGGAAAAATGGTATGAGAAGTTCCGTAACTTTGGTATCGAGCCAGAAACACGTACATTTAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACATCAACGTACAACAACGTGATTGAAGCTTTCGCTGATGTGGGAGATGCAAAGAACATGGAGTACACGTTTGAGCAGATGCGTGCTGAGGGCATGAGAGCAGATACCAAGACGTTCTGTTGCCTTATAAACGGATATGCAAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATTCGAGATTCCAGAAAATACCTCATTTTATAATGCAGTTATATCTGCATGTGCTAAGGCTGAGGATCTGATGGAAATGGATAGAGTATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATTATGATGGAAGCATATGGAAAGGAAGGCATGAATGATAGAGTTCATTACTTGGAGCTGGAAAAGAAACAGGCGAACTTGCTTTTTGTTCTGGACAAATTGGCGTGCAGTGAGAAAACGTACGAGACTCTCAAGTCCGCACACGGTGGCCACCTGTCCTTGTACACCCATGCGAGCTATGTTAAAGGTATTCGCTTACAAGGGCACAGTATTCTAGCGAGCAACAATTGA 1614 43.25 MASFSFSSLLPSSVSFDHGSPSFFPIFVSSSSHSNSRVVRCAFAAPTRKFPPPPPSTSSSLPAKKKHWKQGEFPGITETSAPRKNPLKNVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDASRFDMVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKFEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMMEAYGKEGMNDRVHYLELEKKQANLLFVLDKLACSEKTYETLKSAHGGHLSLYTHASYVKGIRLQGHSILASNN 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5682635 5684909 + CrPI670011_06g011830.1 Cre06g1183 500645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1183 537 PANTHER EXPRESSED PROTEIN 56 478 IPR044179 GO:0003729(InterPro)
Cre06g1183 537 Gene3D Tetratricopeptide repeat domain 78 235 IPR011990 GO:0005515(InterPro)
Cre06g1183 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 280 IPR002885 -
Cre06g1183 537 Gene3D Tetratricopeptide repeat domain 236 375 IPR011990 GO:0005515(InterPro)
Cre06g1183 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Cre06g1183 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Cre06g1183 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Cre06g1183 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Cre06g1183 537 Pfam PPR repeat family 352 399 IPR002885 -
Cre06g1183 537 Pfam PPR repeat family 421 468 IPR002885 -
Cre06g1183 537 Pfam PPR repeat family 280 328 IPR002885 -
Cre06g1183 537 Pfam PPR repeat family 174 222 IPR002885 -
Cre06g1183 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Cre06g1183 537 MobiDBLite consensus disorder prediction 46 95 - -
Cre06g1183 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Cre06g1183 537 Pfam PPR repeat 142 171 IPR002885 -
Cre06g1183 537 Pfam PPR repeat 250 274 IPR002885 -
Cre06g1183 537 Gene3D Tetratricopeptide repeat domain 376 516 IPR011990 GO:0005515(InterPro)
Cre06g1183 537 NCBIfam pentatricopeptide repeat 284 315 IPR002885 -
Cre06g1183 537 NCBIfam pentatricopeptide repeat 354 386 IPR002885 -
Cre06g1183 537 NCBIfam pentatricopeptide repeat 142 174 IPR002885 -
Cre06g1183 537 NCBIfam pentatricopeptide repeat 212 245 IPR002885 -
Cre06g1183 537 NCBIfam pentatricopeptide repeat 247 281 IPR002885 -
Cre06g1183 537 NCBIfam pentatricopeptide repeat 177 211 IPR002885 -
Cre06g1183 537 NCBIfam pentatricopeptide repeat 425 457 IPR002885 -
Cre06g1183 537 NCBIfam pentatricopeptide repeat 319 347 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1183 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1183 Cre-Chr6:5682635 Cre09g0856 Cre-Chr9:8551497 1.90E-47 dispersed
Cre06g1183 Cre-Chr6:5682635 Cre06g2396 Cre-Chr6:31849298 3.00E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35