Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1191 ATGGTAGCTGAAGCTGAGATCAAATGCCCCAAGACCGTTCCTCTCGTGAAAATCAACTATCATCTTTGCGTAACCGATGATCGCGATCTTGAGATCCATTTGCCGCACCCTTCTTCCTCACCTGTTTTTCCCGAGGCAGTTAGTTGTTCAGATATTGTTGAAGACGTGCATATAAAATCAACTGCCATAGATTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGGGATTCTATGGATGATGAACATGTCTGCATTGATGATCTGTCTGCCCACCTCAGATCTATGTTCAAATGTTCTATGCCTAATGGTTTCTATGCTGTTTTTGATGGTCATGGAGGGCCTCATGCAGCTGCTTTTGTCAAGAGGAATGCCATGAGATTATTCTTTGAAGATGCCGATTGGTTAAAAATGCAGGACATTGATTCTATTTCTTTGAAAGATTTGGAGAACTCTCATCGCAAAGCATTTCAATTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCCTGCGGGACAACTGCGTTGACTGCATTGGTCCTTGGGAGGCATTTGCTTGTTGCGAATGCCGGTGATTGCCGAGCAGTCCTATGTAGGAAAGGTGTAGCAGTCCCAATGTCTGAAGATCACAGACCTTCTAATTTACTTGAGCTCAAGCGAGTGGAAGGGATGGGTGGTTTCGTAGATGATGGATATGTTAATGGCTATATTTCAGTAACCAGGACCTTGGGGGATTGGGATCTGAAATTGCTAAATGGCTCTTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATTTTAACAGGCGATGATGAGTTCTTGATTCTCGGCTGTGATGGGATTTGGGACGTAATGTCGAGCCAATATGCTGTCAGTCTCGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCGAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCAGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCTCCAAATTGCGTTCCCCAGCAGCGAATATGCAAGTCGTGTAATCTGACCGAAGAGGCTACAAATAGATTGAGGAGCTTGTTAGAAGCCGAGCCAACGGCACTGCCAATAGGAAAAATGATCAGTTATAGCCGAGCCAATGGCACAAGAAATTCTCAGAACCTTAAACTTGGGGCACATTCTTCACAGAGCTTCCGATGA 1224 44.85 MVAEAEIKCPKTVPLVKINYHLCVTDDRDLEIHLPHPSSSPVFPEAVSCSDIVEDVHIKSTAIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHLRSMFKCSMPNGFYAVFDGHGGPHAAAFVKRNAMRLFFEDADWLKMQDIDSISLKDLENSHRKAFQLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSEDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLLNGSSSPLIAEPQVEHVILTGDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSRELVQEALRLNTSDNLTAIVICFSSPNCVPQQRICKSCNLTEEATNRLRSLLEAEPTALPIGKMISYSRANGTRNSQNLKLGAHSSQSFR 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5767442 5775511 + CrPI670011_06g011910.1 Cre06g1191 500653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1191 407 Gene3D - 53 344 IPR036457 -
Cre06g1191 407 CDD PP2Cc 69 340 IPR001932 -
Cre06g1191 407 SUPERFAMILY PP2C-like 59 342 IPR036457 -
Cre06g1191 407 PANTHER PROTEIN PHOSPHATASE 2C 60 340 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Cre06g1191 407 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Cre06g1191 407 FunFam Probable protein phosphatase 2C 22 53 343 - -
Cre06g1191 407 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Cre06g1191 407 SMART PP2C_SIG_2 85 340 IPR001932 -
Cre06g1191 407 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169(InterPro)
Cre06g1191 407 SMART PP2C_4 60 338 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1191 Cre-Chr6:5767442 Cre11g2280 Cre-Chr11:34511999 2.20E-80 dispersed
Cre06g1191 Cre-Chr6:5767442 Cre09g0461 Cre-Chr9:4379641 7.60E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53853 PF00481 PP2C 2.20E-64 CL0238 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1191 K14803 - csv:101207477 691.034