Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1195 ATGGTGAAGGTACGGATGAACACCGCCGATGTCGCCGCCGAGGTGAAATGCCTCAGAAGATTGATAGGCATGCGATGCGCCAATGTCTATGATCTCTCGCCCAAGACATACATGTTCAAGCTTATGAACAGTAGTGGAGTTACTGAATCAGGTGAGAGTGAGAAGGTGTTGCTGTTGATGGAAAGTGGAGTCAGATTGCATACGACTGAATATGTTCGAGACAAAAGCAATACTCCATCTGGGTTCACTCTCAAGCTAAGAAAGCATATACGCACAAGAAGACTTGAGGATGTGCGGCAACTTGGATACGATAGGATAATCCTATTTCAGTTTGGGCTAGGTGCTAGTGCACACTATGTTATCCTGGAGCTGTATGCCCAGGGGAATATCATTCTTACGGATTCTGAATTTATGGTCTTAACTCTTCTTCGATCACACAGGGACGATAATAAGGGGGTAGCAATTATGTCACGGCATCGATATCCAACTGAAATTTCTCGAGTGTTTGAGAGGACGACAGCTGCAAAATTGCAGGAAGCACTCACTCTAAGTGACAATGTAGTTAATCTTACAGGGAATGCGAATAATGAAACAGATCCTCCAAAGCAGCAGCCAGGTAACCAAAAAGTGTCAAAGCCTTCTGTCTCAAGTAAAGCCCAAGGTGATGGCAGTCGAGCCAAACAGACTACTTTGAAAGCTGTTCTTGGGGAGGCACTGGGATATGGAACTGCACTATCTGAGCACATTATATTAAATGCCGGTCTGATTCCAAATATGAAACTCTGTAATGATAATAAACTTGATGATAATAGTCTTCAGCTCTTAGTGCAAGCTGTTGCAAATTTTGAGGATTGGCTAGAGGATGTAATATTTGGTACTAGAGTTCCTGAAGGTTACATTTTGATGCAGAAGAAAGATGTTAAAAAAGAAGAATCTGAGGCTGCAACTGCTAGCGAGATCTATGATGAGTTCTGCCCAATTTTATTAAACCAATTCATGTCTAGAAAGTATACAAAGTTTGAGACATTTGATGCAGCTTTGGATGAATTCTACAGTAAAATTGAGAGTCAAAGGTCAGAACAGCAACAAAAGGCCAAGGAGAGCTCTGCAACTCAGAAACTTAATAAAATACGTATGGATCAGGGAAATCGTGTAGAGTTATTAAAACAAGAAGTTGACCATTCTGTCAAAATGGCAGAATTAATTGAATACAATTTAGAAGATGTAGATGCTGTTATATTAGCTGTCCGTGTTGCTCTTGCTAAAGGCATGAGCTGGGAGGATCTTGCACGAATGGTGAAAGAAGAAAAGAAATCTGGAAATCCAGTGGCGGGTCTTATTGACAAACTTAATCTTGAAAGGAATTGCATGACTTTGCTGCTGAGCAACAATCTTGATGAAATGGATGACGATGAAAAAACACAACCAGTTGATAAGGTAGAGGTGGATATATCACTTTCAGCTCATGCCAATGCTCGGCGATGGTATGAACTTAAGAAAAAACAAGAGAGCAAACAGGAGAAAACGATCACTGCACATGAAAAAGCTTTTAAAGCTGCTGAAAGAAAAACTCGTCTTCAACTTTCCCAGGAAAAAACAGTTGCCACGATATCCCATATGCGCAAAGTTCATTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGCCGTGATGCTCAACAAAATGAGATGATAGTCAAACGTTACATGTCAAAGGGAGATCTGTATGTCCATGCTGATTTGCACGGAGCTTCTAGCACTGTGATTAAGAATCACAAGCCCGAACAACTAGTGCCTCCGCTCACGCTGAACCAAGCAGGATGTTTTACGGTTTGTCACAGCCAGGCATGGGATTCAAAGATAGTCACTAGTGCCTGGTGGGTTTATCCTCACCAGGTTAGTAAAACTGCTCCCACAGGGGAATATCTTACAGTTGGGAGTTTTATGATTCGAGGAAAGAAGAATTTTCTTCCTCCACATCCTCTTATCATGGGTTTTGGATTGTTATTTCGCTTGGATGAGAGCTCCTTAGGTTCACATTTAAATGAAAGGAGGGTAAGAGGTGAGGAGGATGGAGTGAATGACGTTGAAGAAAATGAGCCTCTTGATGAAGAATCTGATACTGAATATGAGAAGAGGGAATCAGAAGAGGTATCCAATACATCTGCAAATTCATATAGACCAGTTATATCTGGACCTGAAGGCACGGAATCACTTGAAACTCCCATTGAAGGTAGAATGACATTGAACGGTGTCAATAAGGATATCCAACCTGATGTTAGAGATAATGTTTCCCTTGTCACACCACAACTTGAAGATCTCATTGATAAAGCTCTTGAGCTTGGTTCTGCTACTGCATCTAGCAAAAATTATATATTAGAGACTTCCAAGGTTGATTTGGTCGATGAACCCCATCAACATGACAAAAATGCTGCAGGGAGAGAGAAACCCTACATCTCAAAAGCTGAAAGAAGGAAACTTAAGAAAGGTCAGAATAGCAGTTTTACAGACAGCAGCATCAAGCAGGAAAGTGAACAATCAAGAGATGTTGATGTTTCTTTGAATCATCCTCAAAACAAGGTTAATAATCCAAAGTCGGGTTCTGTGAAAATCAGCCGTGGTCAGAGGGGTAAACTCAAGAAAATGAAAGAAAAGTATGCTGATCAAGATGAAGAAGAAAGAAGCATCCGCATGGCTTTATTGGCTTCCTCAGGCAAGGTACCGAAAAATGAAGGGGCACAAAATGTGAAGGAAACAACTTCTGAAGTGAAGAAACCTGATGGAGGTGTTGAAGAAGCTCCAAAGATATGCTATAAATGTAAGAAGCCGGGTCATTTGTCTCGTGATTGCCCTGAACATCCTGATAATCTTTCACATAATCACTCAAATGGTGCAACTCAAGACGATCGCCAAGTGGTCATGGATAATGATGCTGAATTGGACAAAATAACTATGGAAGAGGATGATATTCATGAAATAGGTGAAGAGGAGCGAGAAAAACTGAATGACGTGGATTACTTGACCGGAAATCCTTTGCCTACGGACATTCTTTTGTATGCTGTGCCGGTCTGTGGTCCGTACAATGCAGTGCAATCTTACAAATACCATGTCAAGATTGTTCCAGGCGCTCTAAAGAAAGGGAAAGCTGCAAAAACTGCCTTGAACCTGTTCACGCACATGCCTGAAGCGACAATAAGAGAGAAAGAACTGATTAAGGCATGCACAGACCCAGAGCTCGTCGCGGCCATCATTGGGAATGCTCGGGTTACGGCGGCCGGTCTCACTCAATTAAAGCAGAAGCAAAAAAAAGGAAAGAAAAGCAGCAAGCAAGGAAGCTAG 3360 41.55 MVKVRMNTADVAAEVKCLRRLIGMRCANVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTEYVRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGASAHYVILELYAQGNIILTDSEFMVLTLLRSHRDDNKGVAIMSRHRYPTEISRVFERTTAAKLQEALTLSDNVVNLTGNANNETDPPKQQPGNQKVSKPSVSSKAQGDGSRAKQTTLKAVLGEALGYGTALSEHIILNAGLIPNMKLCNDNKLDDNSLQLLVQAVANFEDWLEDVIFGTRVPEGYILMQKKDVKKEESEAATASEIYDEFCPILLNQFMSRKYTKFETFDAALDEFYSKIESQRSEQQQKAKESSATQKLNKIRMDQGNRVELLKQEVDHSVKMAELIEYNLEDVDAVILAVRVALAKGMSWEDLARMVKEEKKSGNPVAGLIDKLNLERNCMTLLLSNNLDEMDDDEKTQPVDKVEVDISLSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHKPEQLVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEDGVNDVEENEPLDEESDTEYEKRESEEVSNTSANSYRPVISGPEGTESLETPIEGRMTLNGVNKDIQPDVRDNVSLVTPQLEDLIDKALELGSATASSKNYILETSKVDLVDEPHQHDKNAAGREKPYISKAERRKLKKGQNSSFTDSSIKQESEQSRDVDVSLNHPQNKVNNPKSGSVKISRGQRGKLKKMKEKYADQDEEERSIRMALLASSGKVPKNEGAQNVKETTSEVKKPDGGVEEAPKICYKCKKPGHLSRDCPEHPDNLSHNHSNGATQDDRQVVMDNDAELDKITMEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGALKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAAGLTQLKQKQKKGKKSSKQGS 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5792410 5802878 - CrPI670011_06g011950.1 Cre06g1195 500657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1195 1119 MobiDBLite consensus disorder prediction 190 227 - -
Cre06g1195 1119 ProSiteProfiles Zinc finger CCHC-type profile. 944 959 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre06g1195 1119 Pfam NFACT protein RNA binding domain 548 659 IPR008532 -
Cre06g1195 1119 FunFam nuclear export mediator factor Nemf 6 163 - -
Cre06g1195 1119 Pfam NFACT protein C-terminal domain 1005 1096 IPR021846 -
Cre06g1195 1119 SUPERFAMILY Retrovirus zinc finger-like domains 931 965 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre06g1195 1119 MobiDBLite consensus disorder prediction 858 877 - -
Cre06g1195 1119 Pfam NFACT N-terminal and middle domains 21 161 - -
Cre06g1195 1119 Pfam NFACT N-terminal and middle domains 201 521 - -
Cre06g1195 1119 MobiDBLite consensus disorder prediction 831 900 - -
Cre06g1195 1119 Gene3D - 938 983 - -
Cre06g1195 1119 Pfam Zinc knuckle 943 959 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre06g1195 1119 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Cre06g1195 1119 SMART c2hcfinal6 943 959 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre06g1195 1119 MobiDBLite consensus disorder prediction 690 747 - -
Cre06g1195 1119 MobiDBLite consensus disorder prediction 915 936 - -
Cre06g1195 1119 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1112 IPR051608 GO:0000049(PANTHER)|GO:0043023(PANTHER)|GO:0072344(PANTHER)|GO:1990112(PANTHER)|GO:1990116(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1195 K24971 - - csv:101208866 2023.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g199 Blo01g00045 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g212 . . . . . . . Bma05g01011 . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . Bpe05g00809 . . . . . . . . . . Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01511 . . Cme11g02101
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33