Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1204 ATGAATCCCGTCTTCAATGCTCGCACAAAACATATTGAGATTGACATGCACTTTGTACGTGACAAGGAGCAAGGTGATCTTAAAATTAGATATGTTCCTTCCACTAAGAAGACGACGAAGAAGAAGAAGACGACGAAGAAGATCTATTGCCGAGAACGGGATGGGCTGCTGAAACAGCCCAATGGGACTCACTGTCCTCAAGAGGACTGCACAAATTTGGGTATTCGATTTCTCACTTCCGCAAAGCTGGAGAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCTTATCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACTCCCCCGTGAACCATCACGACACTCGCCGGAGCCCCAGTAACTTCCGCGGCGGCGTTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCGCCTCGCTACTCTACTCCCGCTGCTGCTGGTTTTCGCCCCATGGGAACTGGTGGGGGATTCCGTCCAATTCCTGGTCCTGGGGGTGGTGGTTTTGGGTCCAGTTTCCAGCCGCCACCTGTTGCAGGACAGAAACGAGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAGATCACTCTGATGGAAGCAATTATGCCAAGCTATTTGTTGGATCCGTTCCAAGGACAGCCACAGAAGAAATTATTCGCCCGTTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACTACCTCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCGGGCCCAATTCAAGTTAGATATGCTGATGGAGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCACTAAATAAACAAGCTTCAGAAAAAGAAGTCAAGGAAATTTTTTCTCCCTATGGAGTAGTTGAAGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACATAGGGATATGGCACTGGCGGCTATAAATGCTCTCAATGGAATCTTTACAATGAGAGGCTGTGATCAACCGTTAAGTGTCCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCAGGTTTTGGTTCTCGCTTTCAAGCACCTGGGCCAAGACCAATGCCTAATTTTGGTGAATTTATGGGTGATCGAATTCCAATTGATGTACGAGGTTTCAGGCCACCTGTAGATGCTGGTATTCATCCCTTTGGGGGTCAGTTACCTCCTAGGTCGAGTGAAATGGGACCACCTTTGAATTTGGGTGGTCCTGCTAGTGGGTTTAGAGGTCCCAATCAAGGGTTAGTCAATCCAGCATCCTCAGCTTCTCAACAGTCTGCAAGCCAACATCCACCGCATGGCTTGCAAGCGTCGCCAGTGCTAAAGGCAGTTCAGTCACCGAAACAATTGCCACCTTCCAGTCAATTGCACTCTCATGCTCCTTCCTATTCTCAGACACATACATCTGCAGTACTAGCACAGCAGCATAATCAACCACAAAACTTCAATTCTTCTGGTCAATTGCCCTTTAGTCAACCTGCACCTTCCCATGAGTCTTCTGGCTTGGGTGCACAGTTGCCGCTATCTCAGGCTATGGTCCAGCAGGGTGCCTCATCTGCTGCAGCGACACATACTCCTTTGAGCATGAACTTACAATCCCATGCTGCTGCTCCTAATCAACAGCAGCTTCCTACTCCAATTCAGCCACGTCAGAATTCACCTTCCCAGTTAGCACACATGCTGTCACAACAAAAACAAACTCTACAGGCTACTTTTCAGACATCCCAGCAGGCATTCTCTCAGCTACAGCAGCTGATACAACCATCAAATCAAAGTTCAACATTGCAGCCGAGTTCCCAGACTATTAAGCAGCAGTCTCACTGGGCAGGGGCTGTGCCACATACAACTGCCAATGCCGCTTCTGCACCTTCAGATGAACATACATCTACAGTTCCTCCTGTAGCTATAAATACCCAAGCTGTAGCTCCTGTAAAATGCAATTGGACAGAGCATACTTCTCCTGATGGTTATAAATACTATTATAACAGTGTTACCGGTGAGAGCAAGTGGGAGAGACCTGAAGAGCTTTCAGTGATCGAACAACAACAAAAGCCACCAGTACTCCAGCCTCATAACCAGCCACATCCTCAACTACTATCTACTCCGCAACTCTCTCAAACTCCCCAGCCCCAGCTTCAAACTCAGTTCCAGACACAGATGCCCTGCCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGTGCTTATACACAATTGCAGACAGCCAATAGCTCAGTAAATGATCCTACTCGCTTCCACCAGGGATTTCAGGCAACTCAAGAGTGGGCATGGAAGAATAAATAA 2469 48.16 MNPVFNARTKHIEIDMHFVRDKEQGDLKIRYVPSTKKTTKKKKTTKKIYCRERDGLLKQPNGTHCPQEDCTNLGIRFLTSAKLERHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPAAAGFRPMGTGGGFRPIPGPGGGGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDGSNYAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRNLHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRFQAPGPRPMPNFGEFMGDRIPIDVRGFRPPVDAGIHPFGGQLPPRSSEMGPPLNLGGPASGFRGPNQGLVNPASSASQQSASQHPPHGLQASPVLKAVQSPKQLPPSSQLHSHAPSYSQTHTSAVLAQQHNQPQNFNSSGQLPFSQPAPSHESSGLGAQLPLSQAMVQQGASSAAATHTPLSMNLQSHAAAPNQQQLPTPIQPRQNSPSQLAHMLSQQKQTLQATFQTSQQAFSQLQQLIQPSNQSSTLQPSSQTIKQQSHWAGAVPHTTANAASAPSDEHTSTVPPVAINTQAVAPVKCNWTEHTSPDGYKYYYNSVTGESKWERPEELSVIEQQQKPPVLQPHNQPHPQLLSTPQLSQTPQPQLQTQFQTQMPCPQPLQQPSFHSQEGAYTQLQTANSSVNDPTRFHQGFQATQEWAWKNK 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5896621 5909457 + CrPI670011_06g012040.1 Cre06g1204 500666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1204 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 287 IPR000504 GO:0003723(InterPro)
Cre06g1204 822 MobiDBLite consensus disorder prediction 739 822 - -
Cre06g1204 822 MobiDBLite consensus disorder prediction 375 407 - -
Cre06g1204 822 ProSiteProfiles WW/rsp5/WWP domain profile. 695 728 IPR001202 GO:0005515(InterPro)
Cre06g1204 822 SUPERFAMILY RNA-binding domain, RBD 297 402 IPR035979 GO:0003676(InterPro)
Cre06g1204 822 MobiDBLite consensus disorder prediction 86 203 - -
Cre06g1204 822 SMART ww_5 696 728 IPR001202 GO:0005515(InterPro)
Cre06g1204 822 SUPERFAMILY WW domain 692 728 IPR036020 GO:0005515(InterPro)
Cre06g1204 822 FunFam flowering time control protein FCA isoform X2 200 292 - -
Cre06g1204 822 Pfam WW domain 699 726 IPR001202 GO:0005515(InterPro)
Cre06g1204 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 377 IPR000504 GO:0003723(InterPro)
Cre06g1204 822 MobiDBLite consensus disorder prediction 466 486 - -
Cre06g1204 822 PANTHER TRANSFORMER-2-RELATED 295 389 - -
Cre06g1204 822 CDD WW 698 728 IPR001202 GO:0005515(InterPro)
Cre06g1204 822 MobiDBLite consensus disorder prediction 500 615 - -
Cre06g1204 822 Gene3D - 697 739 - -
Cre06g1204 822 MobiDBLite consensus disorder prediction 642 662 - -
Cre06g1204 822 SUPERFAMILY RNA-binding domain, RBD 189 291 IPR035979 GO:0003676(InterPro)
Cre06g1204 822 MobiDBLite consensus disorder prediction 431 615 - -
Cre06g1204 822 FunFam Flowering time control protein FCA 293 383 - -
Cre06g1204 822 Pfam RNA recognition motif 299 363 IPR000504 GO:0003723(InterPro)
Cre06g1204 822 Pfam RNA recognition motif 208 270 IPR000504 GO:0003723(InterPro)
Cre06g1204 822 Gene3D - 193 291 IPR012677 -
Cre06g1204 822 Gene3D - 292 384 IPR012677 -
Cre06g1204 822 SMART rrm1_1 207 283 IPR000504 GO:0003723(InterPro)
Cre06g1204 822 SMART rrm1_1 298 373 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1204 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0395 Cre-Chr5:3595792 Cre06g1204 Cre-Chr6:5896621 1.00E-12 dispersed
Cre06g1204 Cre-Chr6:5896621 Cre09g2113 Cre-Chr9:40117281 6.20E-13 dispersed
Cre09g0612 Cre-Chr9:5770396 Cre06g1204 Cre-Chr6:5896621 9.50E-41 transposed
Cre10g1317 Cre-Chr10:26515496 Cre06g1204 Cre-Chr6:5896621 7.00E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37