Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g1206 | ATGGAGGAGGAGAAGAAGAAGGAAGAAGTTTTGAGAAATAGAGATCAGATGGGAAATTCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATAATAATATGTTCGATTTTCCATTCATCGACTCCACTGATTCTTCTTCTTCTTCTTTTAAGCCTTCCACTTTCTTGGATTTGTTAGCCACCCAAGATTACACCCCTTCTTTATTCGATCTTTTCTCTCCTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCACCACCACCCTCCTCCGCCGTGCCTGAGTCATCCGAAGTCCTCAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGCCTTCTCGACGCCGATGATGCCGATCGGGATAAATCGCCTTTCAACAAACAGTTGAAAGCAAAAAAGAAAAATCAAAAAAGGGGAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGATGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCCTATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCCGACGACCCTTCAGTCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTATATTAGCCGGCGCCGCCGCCTTCGCCTCACCCCAGCCGCCGCTTGTTTTCCCACAGCCGCAATTATTCAGAAACCATCACCAGCAATATACGTACGCTCCGGCGCCGCCTGTGGACGTTGTCACGTGCGGCCGAGGGTTCGATCCCGTGTTTCATAGTTTTGGTGGTGAAGAACGTCGTCGTATTGATGGAATAACTTGTTCTAATTCTGATTCTTTCCAAGACCATGGCCTTCTACAAGATATGATCGTACCCTCCTCCAACTCCTTACAAATCCCAGAAGAAGATAAACAAAATTAA | 981 | 48.22 | MEEEKKKEEVLRNRDQMGNSGLLFSDAIIPNNNNMFDFPFIDSTDSSSSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERLLDADDADRDKSPFNKQLKAKKKNQKRGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGAILAGAAAFASPQPPLVFPQPQLFRNHHQQYTYAPAPPVDVVTCGRGFDPVFHSFGGEERRRIDGITCSNSDSFQDHGLLQDMIVPSSNSLQIPEEDKQN | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5917369 | 5918797 | - | CrPI670011_06g012060.1 | Cre06g1206 | 500668 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g1206 | 326 | MobiDBLite | consensus disorder prediction | 71 | 92 | - | - | |
Cre06g1206 | 326 | Pfam | WRKY DNA -binding domain | 162 | 219 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre06g1206 | 326 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cre06g1206 | 326 | ProSiteProfiles | WRKY domain profile. | 156 | 221 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre06g1206 | 326 | SMART | WRKY_cls | 161 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre06g1206 | 326 | FunFam | WRKY transcription factor 57 | 147 | 221 | - | - | |
Cre06g1206 | 326 | MobiDBLite | consensus disorder prediction | 67 | 150 | - | - | |
Cre06g1206 | 326 | Gene3D | WRKY domain | 145 | 222 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre06g1206 | 326 | MobiDBLite | consensus disorder prediction | 118 | 134 | - | - | |
Cre06g1206 | 326 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 98 | 227 | IPR044810 | GO:0003700(InterPro) | |
Cre06g1206 | 326 | MobiDBLite | consensus disorder prediction | 93 | 116 | - | - | |
Cre06g1206 | 326 | SUPERFAMILY | WRKY DNA-binding domain | 153 | 221 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2148 | Cre-Chr2:35073683 | Cre06g1206 | Cre-Chr6:5917369 | 1.30E-37 | dispersed | |
Cre04g1225 | Cre-Chr4:30981811 | Cre06g1206 | Cre-Chr6:5917369 | 1.90E-29 | dispersed | |
Cre04g2045 | Cre-Chr4:37696344 | Cre06g1206 | Cre-Chr6:5917369 | 3.90E-38 | dispersed | |
Cre06g1206 | Cre-Chr6:5917369 | Cre08g0937 | Cre-Chr8:22569347 | 9.60E-26 | dispersed | |
Cre05g1530 | Cre-Chr5:20665358 | Cre06g1206 | Cre-Chr6:5917369 | 1.30E-29 | transposed | |
Cre08g0967 | Cre-Chr8:22830386 | Cre06g1206 | Cre-Chr6:5917369 | 1.60E-40 | transposed | |
Cre10g1316 | Cre-Chr10:26507672 | Cre06g1206 | Cre-Chr6:5917369 | 4.70E-43 | wgd | |
Cre05g0812 | Cre-Chr5:7201861 | Cre06g1206 | Cre-Chr6:5917369 | 2.70E-42 | wgd | |
Cre06g1206 | Cre-Chr6:5917369 | Cre09g0476 | Cre-Chr9:4541985 | 6.80E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53854 | PF03106 | WRKY | 6.30E-27 | CL0274 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g1206 | - | - | - | 0.0 |