Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1206 ATGGAGGAGGAGAAGAAGAAGGAAGAAGTTTTGAGAAATAGAGATCAGATGGGAAATTCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATAATAATATGTTCGATTTTCCATTCATCGACTCCACTGATTCTTCTTCTTCTTCTTTTAAGCCTTCCACTTTCTTGGATTTGTTAGCCACCCAAGATTACACCCCTTCTTTATTCGATCTTTTCTCTCCTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCACCACCACCCTCCTCCGCCGTGCCTGAGTCATCCGAAGTCCTCAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGCCTTCTCGACGCCGATGATGCCGATCGGGATAAATCGCCTTTCAACAAACAGTTGAAAGCAAAAAAGAAAAATCAAAAAAGGGGAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGATGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCCTATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCCGACGACCCTTCAGTCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTATATTAGCCGGCGCCGCCGCCTTCGCCTCACCCCAGCCGCCGCTTGTTTTCCCACAGCCGCAATTATTCAGAAACCATCACCAGCAATATACGTACGCTCCGGCGCCGCCTGTGGACGTTGTCACGTGCGGCCGAGGGTTCGATCCCGTGTTTCATAGTTTTGGTGGTGAAGAACGTCGTCGTATTGATGGAATAACTTGTTCTAATTCTGATTCTTTCCAAGACCATGGCCTTCTACAAGATATGATCGTACCCTCCTCCAACTCCTTACAAATCCCAGAAGAAGATAAACAAAATTAA 981 48.22 MEEEKKKEEVLRNRDQMGNSGLLFSDAIIPNNNNMFDFPFIDSTDSSSSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERLLDADDADRDKSPFNKQLKAKKKNQKRGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGAILAGAAAFASPQPPLVFPQPQLFRNHHQQYTYAPAPPVDVVTCGRGFDPVFHSFGGEERRRIDGITCSNSDSFQDHGLLQDMIVPSSNSLQIPEEDKQN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5917369 5918797 - CrPI670011_06g012060.1 Cre06g1206 500668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1206 326 MobiDBLite consensus disorder prediction 71 92 - -
Cre06g1206 326 Pfam WRKY DNA -binding domain 162 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g1206 326 MobiDBLite consensus disorder prediction 1 26 - -
Cre06g1206 326 ProSiteProfiles WRKY domain profile. 156 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g1206 326 SMART WRKY_cls 161 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g1206 326 FunFam WRKY transcription factor 57 147 221 - -
Cre06g1206 326 MobiDBLite consensus disorder prediction 67 150 - -
Cre06g1206 326 Gene3D WRKY domain 145 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g1206 326 MobiDBLite consensus disorder prediction 118 134 - -
Cre06g1206 326 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 98 227 IPR044810 GO:0003700(InterPro)
Cre06g1206 326 MobiDBLite consensus disorder prediction 93 116 - -
Cre06g1206 326 SUPERFAMILY WRKY DNA-binding domain 153 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2148 Cre-Chr2:35073683 Cre06g1206 Cre-Chr6:5917369 1.30E-37 dispersed
Cre04g1225 Cre-Chr4:30981811 Cre06g1206 Cre-Chr6:5917369 1.90E-29 dispersed
Cre04g2045 Cre-Chr4:37696344 Cre06g1206 Cre-Chr6:5917369 3.90E-38 dispersed
Cre06g1206 Cre-Chr6:5917369 Cre08g0937 Cre-Chr8:22569347 9.60E-26 dispersed
Cre05g1530 Cre-Chr5:20665358 Cre06g1206 Cre-Chr6:5917369 1.30E-29 transposed
Cre08g0967 Cre-Chr8:22830386 Cre06g1206 Cre-Chr6:5917369 1.60E-40 transposed
Cre10g1316 Cre-Chr10:26507672 Cre06g1206 Cre-Chr6:5917369 4.70E-43 wgd
Cre05g0812 Cre-Chr5:7201861 Cre06g1206 Cre-Chr6:5917369 2.70E-42 wgd
Cre06g1206 Cre-Chr6:5917369 Cre09g0476 Cre-Chr9:4541985 6.80E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53854 PF03106 WRKY 6.30E-27 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1206 - - - 0.0