Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre06g1207 | ATGGCGTCATCTGTTCTTTCGAATTCCGATCGCGCGCGGGAGTCTTCAAGGAAGCAAAAGAAGAAGAAAAGCCACGGCAACAGAGATCATCATCAAAACCAGAATCATATTAAATGGAAATCTCAAGCTGAACAGGAAATTTACTCGTCCAAGCTCGTACGAGCATTGAATCAAGTGAGACTCAGTCCTTCCAACGAAGCGCCGCCACGCCGCGGTAGAGCTGTACGCGAGGCTGCCGATAGAGTCCTTGCCGTTGCCGCCAAGGGGAGAACCAGGTGGAGTCGAGCCCTATTAACGAACAGGTTGAAGCTCAAGTTCAGGAAGCCCAAGAGACAAAGGTCAGCATCCACCGCTGGAAACAACCGGTCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAGACGGAAATCCTTACCGGCGGTACAAAGGAAAGTTAGGGTTCTTGGCCGGCTAGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTAATTCTGGAAGAAGCTACCGATTACATAGCTGCCCTTGAAATGCAAGTTCGAGCCATGAGTGCCCTTGCTGAGTTGCTCTCGGCTTCAACTTCTGCTGCAGGCTCTAGTTCGACTCCTTCAAGCTGA | 612 | 51.31 | MASSVLSNSDRARESSRKQKKKKSHGNRDHHQNQNHIKWKSQAEQEIYSSKLVRALNQVRLSPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRALLTNRLKLKFRKPKRQRSASTAGNNRSKKPRVSVLRLRRKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSTPSS | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5951453 | 5952064 | - | CrPI670011_06g012070.1 | Cre06g1207 | 500669 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre06g1207 | 203 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 141 | 191 | IPR036638 | GO:0046983(InterPro) | |
| Cre06g1207 | 203 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - | |
| Cre06g1207 | 203 | CDD | bHLH_AtIBH1_like | 130 | 185 | IPR044549 | GO:0006355(InterPro) | |
| Cre06g1207 | 203 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Cre06g1207 | 203 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 36 | 188 | IPR044660 | GO:0006355(InterPro) | |
| Cre06g1207 | 203 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 125 | 174 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g2037 | Cre-Chr3:37402927 | Cre06g1207 | Cre-Chr6:5951453 | 1.20E-37 | dispersed | |
| Cre02g1804 | Cre-Chr2:31361496 | Cre06g1207 | Cre-Chr6:5951453 | 3.20E-32 | wgd | |
| Cre05g0810 | Cre-Chr5:7164530 | Cre06g1207 | Cre-Chr6:5951453 | 5.70E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre06g1207 | - | - | - | 0.0 |