Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1210 ATGCTCCGGGGATTCATGAATCTGCTCTCTCTTTGCTGGAAGCCTTTCGGGCGTCCTACTGATGATTTCACCTCTGGTGGTGTTATTGGGACCAATTGTGGTGCTAAAGACACCAAGGATAGCTTGCTTTGGTTCTATGATTATGGTAAGTATGCTTCCGGTGAATTCTCCATGGCTGTTGTTCAAGCCAACCAAGTTCTTGAGGACCAGAGCCAAATTGAATCTGGCCCTTTTGGTACTTTCGTCGGAATCTACGATGGTCATGGTGGCCCTGACGCTGCTCGTTACGTCTGTGATAACTTGTTTAGACGTTTCCAAGATGAGCAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTCGAACGGAGGAAGGGTTCACGGCTGTTGTGTCAGAGTTGTGGAATACTCGACCCCAGATAGCAACAGTTGGGACATGCTGTCTAGTAGGGGTGATACACGAGCAGACACTCTACATTGCGAGTCTAGGAGATTCTCGTGCTGTGTTAGGGAAGAAAGTTGGCAACACTGGGGAGATTGCTGCCATTCAATTATCGACCGAGCATAATGCAAATCTTGAGGAAATCAGGGAAGAATTAAGCGCCATGCATCGTGATGATCCTCAAATCGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGGGATGTCTATTTGAAACATGCTCAGTATAATAATGAAAGAATCAATGCTAAATTTAGGCTTCCTGAACCAATTGACAGGCCTATATTGACTGCTGTACCTACGATTATTGCTCACCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAAAAAGCAGTGGAGATTGTCCATAATCATCCACGTGCAGGAAGTGCAAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTCGAAAACGAGAGATGCGGTATTCGGATCTCCGAAAGATCGACAAGAAGGTTCGGCGTCATTTTCATGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGATCTTATATCCAGAAGCAATGTCCTCCTAGATCAACCATTATCAGTAAGAAGTGCTTTTGATCATTAA 1134 44.18 MLRGFMNLLSLCWKPFGRPTDDFTSGGVIGTNCGAKDTKDSLLWFYDYGKYASGEFSMAVVQANQVLEDQSQIESGPFGTFVGIYDGHGGPDAARYVCDNLFRRFQDEQRGVVTRETILNAFRRTEEGFTAVVSELWNTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEEIREELSAMHRDDPQIVVQRHGVWRVKGIIQVSRSIGDVYLKHAQYNNERINAKFRLPEPIDRPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRSAFDH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5983263 5986724 - CrPI670011_06g012100.1 Cre06g1210 500672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1210 377 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Cre06g1210 377 Pfam Protein phosphatase 2C 80 320 IPR001932 -
Cre06g1210 377 ProSiteProfiles PPM-type phosphatase domain profile. 52 353 IPR001932 -
Cre06g1210 377 Gene3D - 47 362 IPR036457 -
Cre06g1210 377 PANTHER PROTEIN PHOSPHATASE 53 352 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre06g1210 377 CDD PP2Cc 56 353 IPR001932 -
Cre06g1210 377 SMART PP2C_4 49 351 IPR001932 -
Cre06g1210 377 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Cre06g1210 377 Coils Coil 188 208 - -
Cre06g1210 377 FunFam Probable protein phosphatase 2C 42 46 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1210 Cre-Chr6:5983263 Cre10g0310 Cre-Chr10:1963380 8.00E-117 dispersed
Cre06g1210 Cre-Chr6:5983263 Cre02g1523 Cre-Chr2:27503923 8.50E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1210 K01102 - csv:101207284 723.391