Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1214 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTGAATGCCGCCGCCGCCGGAGGTGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCGCCATTGCAAACCATGTAATTCTTCGTGTCATGGCGGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGCGATTTGCGGCCATTTCAAGATTTGAAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGCAGATTCCAGCATGGTCCGATCACGAATCCCAGTTTCGGCTAAGCTTGGTCTTGATACTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGCGGAGCTAGCACACCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCGAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAACGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTTCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATAATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGAGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAACATCCCTCAAAAGGAAACATAA 2403 45.69 MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAAAGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLKIPLSVGSKQQDADSSMVRSRIPVSAKLGLDTQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNNNNNNNNNNNIPQKET 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6022326 6026956 - CrPI670011_06g012140.1 Cre06g1214 500676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1214 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1214 800 MobiDBLite consensus disorder prediction 770 800 - -
Cre06g1214 800 MobiDBLite consensus disorder prediction 88 120 - -
Cre06g1214 800 FunFam PAS domain-containing protein tyrosine kinase family protein 584 775 - -
Cre06g1214 800 MobiDBLite consensus disorder prediction 432 462 - -
Cre06g1214 800 SMART pas_2 131 198 IPR000014 -
Cre06g1214 800 Pfam PAS fold 132 240 IPR013767 GO:0006355(InterPro)
Cre06g1214 800 FunFam PAS domain-containing protein tyrosine kinase 499 583 - -
Cre06g1214 800 NCBIfam PAS domain S-box protein 131 241 IPR000014 -
Cre06g1214 800 MobiDBLite consensus disorder prediction 35 72 - -
Cre06g1214 800 Gene3D Transferase(Phosphotransferase) domain 1 584 800 - -
Cre06g1214 800 SUPERFAMILY Protein kinase-like (PK-like) 489 756 IPR011009 -
Cre06g1214 800 ProSiteProfiles Protein kinase domain profile. 506 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1214 800 CDD STKc_MAP3K-like 512 758 - -
Cre06g1214 800 Coils Coil 6 26 - -
Cre06g1214 800 PANTHER SERINE-THREONINE PROTEIN KINASE 69 761 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cre06g1214 800 ProSiteProfiles PAS repeat profile. 129 200 IPR000014 -
Cre06g1214 800 MobiDBLite consensus disorder prediction 366 380 - -
Cre06g1214 800 SMART serkin_6 506 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1214 800 Pfam Protein tyrosine and serine/threonine kinase 506 758 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1214 800 MobiDBLite consensus disorder prediction 341 355 - -
Cre06g1214 800 Gene3D Phosphorylase Kinase; domain 1 499 583 - -
Cre06g1214 800 Gene3D PAS domain 141 243 - -
Cre06g1214 800 PRINTS Tyrosine kinase catalytic domain signature 666 676 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1214 800 PRINTS Tyrosine kinase catalytic domain signature 685 707 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1214 800 PRINTS Tyrosine kinase catalytic domain signature 580 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1214 800 PRINTS Tyrosine kinase catalytic domain signature 729 751 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1214 800 PRINTS Tyrosine kinase catalytic domain signature 619 637 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1214 800 MobiDBLite consensus disorder prediction 772 800 - -
Cre06g1214 800 SUPERFAMILY PYP-like sensor domain (PAS domain) 133 240 IPR035965 -
Cre06g1214 800 MobiDBLite consensus disorder prediction 337 380 - -
Cre06g1214 800 CDD PAS 140 241 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1214 Cre-Chr6:6022326 Cre11g1883 Cre-Chr11:30496870 3.90E-89 dispersed
Cre06g1214 Cre-Chr6:6022326 Cre10g2049 Cre-Chr10:35190531 2.50E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64202 PF07714 PK_Tyr_Ser-Thr 3.70E-69 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1214 - - - 0.0