Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1217 ATGAGTAATTCCAATTCATATTTAAATGTTGAAGTCTTTAGGTGGGTTATGGTATTTCTTTTTGGTCTTCTTTTATCCAACGTCATTCCTACGATTGTTGGTACGACGCCATCAAACAACGTAGAATCGAGTATCTGTCCAAAAACTAGGAATCCATCATTTTGCGCAAGCGTTTTGAAATCTGGTGGCAGCACAGACCTAAAAGCACTAGCCACTTACACCCTAAACCTTGCTCATACAAATGCTGGAAAATCTATGACCCTAGCCAAGTCAGTTGCATCCACAACAACCAATTCTCAACTTAAGAATGTATATTTATCTTGCTCTCACAATTACAACAATGCCATGGGCGACATTGAAAATGCTCAAAACTATTTGGCCACGAGTGACTTTAATGGTGTTAATCTTGCAACTTCTGGCGTCATGACGGCAGTTGACGACTGTCAAGATAGCTTCCAGCAGCCGCTGATAGACACGTCATTGCTTTCAGAGAATGGCAAGACTTTGATAGATATTTGTAGCATTATTTTAGTTATATCTAATCTTCTTCCTGGGCCCATATAA 564 39.54 MSNSNSYLNVEVFRWVMVFLFGLLLSNVIPTIVGTTPSNNVESSICPKTRNPSFCASVLKSGGSTDLKALATYTLNLAHTNAGKSMTLAKSVASTTTNSQLKNVYLSCSHNYNNAMGDIENAQNYLATSDFNGVNLATSGVMTAVDDCQDSFQQPLIDTSLLSENGKTLIDICSIILVISNLLPGPI 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6060936 6061499 - CrPI670011_06g012170.1 Cre06g1217 500679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1217 187 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 184 IPR035513 -
Cre06g1217 187 Pfam Plant invertase/pectin methylesterase inhibitor 43 179 IPR006501 GO:0004857(InterPro)
Cre06g1217 187 NCBIfam pectinesterase inhibitor domain 17 182 IPR006501 GO:0004857(InterPro)
Cre06g1217 187 FunFam Invertase/pectin methylesterase inhibitor family protein 39 183 - -
Cre06g1217 187 CDD PMEI 45 183 IPR034086 GO:0043086(InterPro)|GO:0046910(InterPro)
Cre06g1217 187 SMART PMEI_2 36 179 IPR006501 GO:0004857(InterPro)
Cre06g1217 187 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 184 IPR035513 -
Cre06g1217 187 PANTHER PECTINESTERASE INHIBITOR-LIKE 18 183 IPR052421 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1217 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1217 Cre-Chr6:6060936 Cre09g0846 Cre-Chr9:8455049 1.10E-42 dispersed
Cre06g1216 Cre-Chr6:6055969 Cre06g1217 Cre-Chr6:6060936 4.10E-49 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g67 . . . . . Bpe14g01100 . . . . . . . . . . . . . . . . . . Cla06g00429 Cam06g0452 Cec06g0459 Cco06g0458 Clacu06g0439 Cmu06g0440 Cre06g1217 . . . . . . . . . . . Bda13g00216 . . Bma02g00928 . . . . . . . . Cpe12g00319 . Bhi12g01927 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000169 1 5 1 1 0 8 0 5 6 6 3 7 6 46 17 9 7 2 3 5 13 2 4 4 6 4 5 5 9 0 190