Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1238 ATGGATCTGAGCCACATGAAAGGATCGATGCCGATGCCGATGCCGACGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCTGATCAGTTCCCGGCCGGTCTTCGCGTCCTGGTTGTTGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAACCGGGCGGAGATTGCGTTATCCATGCTTCGTGAGAACAAAAATGGTTATGATATTGTTTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCACGGTGCTTGTGATTACCTGATCAAACCCGTTCGGATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGAAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGTAGCGTGGATGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCCGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCGGGACTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCACCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTATGGGTCAATGGCCTCATTCAATGGGATTGATCTTCAAACGCTTTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACGGGACTTCGTAGGCCAACCGCAAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGTTTTGAAAACCCAAAATTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAACAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAACTAATGCATTTGTCTCAACACCAAACTGTGGGACAGACTCTAAGTAACTCTCCTGCTAGCCACTTAAGGAAGCCGATCGTATCAGGTAACGTTACGAGGGGAAATGGGACTGCTGATAATAGCCACAGATCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCCAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTTGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAACGTAAGCACCTTGGCCTTTGGTAATTCTCACCATGGGAACTTTATACAGGATAGCTTTGATATCCCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAACCAAAATTCGTCAGTCATTGGAAAGACTATCTTTTCCTTTTCGGATTCAACTCAACCAGAAAATCCACAAAGTATCGCCCAAAACTCGCTTCTCGATCCCGTGGAGGTCAAAACTCAGAGAATCCCAGATGCAAGCTATCAAACTGACCTCTTATCTAAGGACTTTGGCCAGGATGAACTTCTTGGCGTCTTTCTCAAACAACAGCAACAAGGAGACAACGGATCGGTCGGGTACCAAACGGAAAATATTTATTTCAATGCAAGTCTGAAGCAATCTTCCTCAGAATGCTCACACAGAAGATGCAAATCTTACTCCAACTTCGATTGGCGTTTAAAGCCTGAAGCGATTTATTTTAGGATGCGTGTGAAACTGTTTGTTTGTAACGGGCACATCGCTGGATTGTCGATGCAAGGCTCGGCGCGGCTCCATTGTATTTGGAACCAGTTAGGAGATTTCTCATCTCTCTAA 2205 44.26 MDLSHMKGSMPMPMPTPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGYDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPYGSMASFNGIDLQTLSVTGQLSPQSLAALQATGLRRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTRGNGTADNSHRSGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMLSYDVFSDLHLQKSHDWDSQNVSTLAFGNSHHGNFIQDSFDIPPSTLIHHGFPSSQTNGQNQNSSVIGKTIFSFSDSTQPENPQSIAQNSLLDPVEVKTQRIPDASYQTDLLSKDFGQDELLGVFLKQQQQGDNGSVGYQTENIYFNASLKQSSSECSHRRCKSYSNFDWRLKPEAIYFRMRVKLFVCNGHIAGLSMQGSARLHCIWNQLGDFSSL 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6289075 6293307 - CrPI670011_06g012380.1 Cre06g1238 500700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1238 734 FunFam Two-component response regulator 37 174 - -
Cre06g1238 734 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677(InterPro)
Cre06g1238 734 Gene3D - 37 171 - -
Cre06g1238 734 ProSiteProfiles Response regulatory domain profile. 38 153 IPR001789 GO:0000160(InterPro)
Cre06g1238 734 MobiDBLite consensus disorder prediction 194 214 - -
Cre06g1238 734 MobiDBLite consensus disorder prediction 178 193 - -
Cre06g1238 734 Pfam Myb-like DNA-binding domain 219 269 IPR001005 -
Cre06g1238 734 PIRSF RR_ARR_type-B 19 681 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cre06g1238 734 FunFam Two-component response regulator 213 276 - -
Cre06g1238 734 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 335 IPR045279 GO:0009736(InterPro)
Cre06g1238 734 SUPERFAMILY CheY-like 36 160 IPR011006 -
Cre06g1238 734 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 273 IPR017930 -
Cre06g1238 734 Pfam Response regulator receiver domain 39 147 IPR001789 GO:0000160(InterPro)
Cre06g1238 734 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
Cre06g1238 734 Gene3D - 214 276 - -
Cre06g1238 734 MobiDBLite consensus disorder prediction 446 462 - -
Cre06g1238 734 MobiDBLite consensus disorder prediction 160 177 - -
Cre06g1238 734 MobiDBLite consensus disorder prediction 160 214 - -
Cre06g1238 734 SMART REC_2 37 149 IPR001789 GO:0000160(InterPro)
Cre06g1238 734 MobiDBLite consensus disorder prediction 429 462 - -
Cre06g1238 734 CDD REC_typeB_ARR-like 39 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1811 Cre-Chr5:30211195 Cre06g1238 Cre-Chr6:6289075 3.20E-87 dispersed
Cre06g0845 Cre-Chr6:1763278 Cre06g1238 Cre-Chr6:6289075 2.50E-42 dispersed
Cre06g1238 Cre-Chr6:6289075 Cre06g2086 Cre-Chr6:28618326 3.30E-82 dispersed
Cre09g0522 Cre-Chr9:4911764 Cre06g1238 Cre-Chr6:6289075 4.70E-27 transposed
Cre05g0777 Cre-Chr5:6852882 Cre06g1238 Cre-Chr6:6289075 1.30E-215 wgd
Cre06g1238 Cre-Chr6:6289075 Cre09g0521 Cre-Chr9:4907524 2.10E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53859 PF00072 Response_reg 7.00E-22 CL0304 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1238 K14491 - csv:101210138 1211.82