Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1248 ATGGTGGTTTTCCCGGAAGTCATCGAAGAAATGGTAAGAAATATGTCGATAAAGAAAAAGAATAATGAAGATGATGGCGGTAAAGAAGGGAGTCGAGAAGTAATGAGTAAAGAGGGAAAAAGAAACAAATCCATGATTTGTTTATCTGGAAGTGTTAAAACCACCAAGTTCGATGATATGGCTTCTGTTTGCTCCAAGAGAGGAAATAAAGGAATTAATCAGGATTCTCTCGTTGTTTGGGAGGATTATGGCAACCGAGGAGATGTAGTTTTATGTGGAATGTTTGATGGGCATGGGCCTTGGGGCCACATGATTAGCAAACAAGTCAGAAAGTCACTACCTTCTCAATTACTTACAAATTGGCAACAAAACCTTTCCATGCAAACCGACCAAAACCATCTCTTTCCTTTCAACCTATGGAAGCAATCTTGCTTAAAAACTTATGCCGCCATTGATGAAGAGCTCAAGCAACACCCTCGCATTGATTCTTTTTACAGTGGCACCACCGCTTTAACCCTCGTTAAACAGGGGCGACACCTTGTTGTTGCAAATGCTGGCGATTCACGAGCTGTGTTGGCGGTAACTTCTGGTGATGGCTGCTTGAAACCAATTCAACTCTCCGTTGATTTCCGACCTAATTTGCCTGAGGAAGCTGAAAGAATAAAACAATCAAAAGGGAGAGTGGTATGTTTAAAAGATGAACCTGGGGTTTATAGGGTGTGGACTCCCGATTCAGGGACTCCAGGATTGGCAATTTCTAGAGCTTTTGGCGATTATTGCACCAAACAATACGGTCTCATTTCTGTGCCTGATGTAAGCCATCGAATCATCACTACTTCAGATCAATTTGTCATTGTCGCCACCGATGGGGTATGGGACGTCATGTCGAATCAAGAAGCGGTTCACATAGTTTCTTCAACACCAAATAGGGAAATGTCGGCCAAAAGGCTAGTGGATTGTGCTGCACGTGCATGGAAATCAAAGAAACGAGGATCATTTACGCCATTGTTTGAGCTTCTGATTCGCGCGGGCAGTGCCATATCGTTTCGCTCTCAAATTCGCTCATCTCTAAGCCATTCCCCTTCGCATCGCATCCTAATCGGAAGGAACTTCGAGATGAGTCCGATTTTGAATGAAGCAGAACCGAAGGAACTGCGAGATGAGTCTGATATTGAAGCAATCTTCTCCGACGGCGATTATATTTCCGTTTTTGGTGTTGAATCTCTCCTCTCAGAACCAAAGGAGCTGCGAGATGAGTCCGATTTTGAAGCAATCTTCTCCGACGGCGATTATATTTCCGTTTGTGGCTTTGGATCTCTCCTCTCTGAGAGGAGTGCGCGAAGTACTTTTCCTGATTTGATCAACTTTAGAGTTGCGAGATTGAACGATTTCAGACGCGTTTTCGGAATTATAGCTCCTATATTCTTTGAGCACGGCATTGCTAAATCTGAAACCAAGGAGATTTCAAGCTTATTTGCGGAGCCTTGTGAAGGAGAAACTATCATCATTACGGTTTTCGAGATTAAGAAGTCTGAGATTCCAGCGTTCATACAGAGAGAGTTTGCGTTTCGATTTCTAGCTGTTCTTCCTGAAACATTAGACGGAAAGCTATATGATAAACCAGCGGTGCTTTGTTCTCGATCCACTGACGAGGAGTTTTTCCAAGTGAAATGCAAAGGAAACAAGGACATTTTTCTTCAGCATTATGGTCGTCATAATATTGATAAGATCTGGAGAGATGATATCTTACCTTGTCGCGTCTATCTTCAACACTGTATTTTAGCTGCAAAAAACCTAGGTGACATTGCTTATAACAACTTTTTGGATCACACTTTCCTGGGAGATCGTTGTACAACTATCCATGAATATTTAGTCGCTAATGGTTCATCCATTATAGAAGAGGAGCCTCCAGAATCTCTCAAATTTCGATATGGCGGTTGA 1941 42.5 MVVFPEVIEEMVRNMSIKKKNNEDDGGKEGSREVMSKEGKRNKSMICLSGSVKTTKFDDMASVCSKRGNKGINQDSLVVWEDYGNRGDVVLCGMFDGHGPWGHMISKQVRKSLPSQLLTNWQQNLSMQTDQNHLFPFNLWKQSCLKTYAAIDEELKQHPRIDSFYSGTTALTLVKQGRHLVVANAGDSRAVLAVTSGDGCLKPIQLSVDFRPNLPEEAERIKQSKGRVVCLKDEPGVYRVWTPDSGTPGLAISRAFGDYCTKQYGLISVPDVSHRIITTSDQFVIVATDGVWDVMSNQEAVHIVSSTPNREMSAKRLVDCAARAWKSKKRGSFTPLFELLIRAGSAISFRSQIRSSLSHSPSHRILIGRNFEMSPILNEAEPKELRDESDIEAIFSDGDYISVFGVESLLSEPKELRDESDFEAIFSDGDYISVCGFGSLLSERSARSTFPDLINFRVARLNDFRRVFGIIAPIFFEHGIAKSETKEISSLFAEPCEGETIIITVFEIKKSEIPAFIQREFAFRFLAVLPETLDGKLYDKPAVLCSRSTDEEFFQVKCKGNKDIFLQHYGRHNIDKIWRDDILPCRVYLQHCILAAKNLGDIAYNNFLDHTFLGDRCTTIHEYLVANGSSIIEEEPPESLKFRYGG 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6383007 6393160 - CrPI670011_06g012480.1 Cre06g1248 500710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1248 646 MobiDBLite consensus disorder prediction 18 41 - -
Cre06g1248 646 SMART PP2C_4 50 324 IPR001932 -
Cre06g1248 646 ProSiteProfiles PPM-type phosphatase domain profile. 60 340 IPR001932 -
Cre06g1248 646 MobiDBLite consensus disorder prediction 18 40 - -
Cre06g1248 646 Pfam Protein phosphatase 2C 86 322 IPR001932 -
Cre06g1248 646 Gene3D - 50 333 IPR036457 -
Cre06g1248 646 SUPERFAMILY PP2C-like 60 325 IPR036457 -
Cre06g1248 646 CDD PP2Cc 60 327 IPR001932 -
Cre06g1248 646 PANTHER OS05G0358400 PROTEIN 414 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g2022 Cre-Chr3:37204586 Cre06g1248 Cre-Chr6:6383007 2.00E-96 dispersed
Cre06g1248 Cre-Chr6:6383007 Cre10g0602 Cre-Chr10:5556265 5.80E-83 dispersed
Cre06g1247 Cre-Chr6:6375446 Cre06g1248 Cre-Chr6:6383007 4.00E-114 tandem
Cre02g1841 Cre-Chr2:31693041 Cre06g1248 Cre-Chr6:6383007 6.80E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1248 - - - 0.0