Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1249 ATGGCGGACGAGTTACTCCACGACACTGGAATCCGAAAACGCCGCGTGTTCGTAACGCGAGGCTTAGACCAATTCCCTCACGGCAATGGCCCGCCGTCCATATATAGTGGGCCGGGCTGGGCCATATATGGGCCTCAATTGGTCCTGCTTTCTCTTGCTGCTCAAGATGGTCGATTGTTGCTGTCGGCTACCTATGCCTGCCCGCTTCTTGCTCAACCATCTCTCTACGCTCTTTCGAATTCCTATTTTCATCCCATTAGAATCCAACAGAAAATACTCTTCAATTGTGGCCGAATTCGATCAAACCAAGCCGCTGTGGCGTTGGACAGATTAGGAATGGGATCGGAGCAGTTGATGGCCGGAGGCGGGCCTCGATACGTTCAAATGCAATCGGAGCCGCCTTCGGCTTCGATGTCGTCGTTTTTTTCATTTCATCACGACGCTCCTGAGCCGACAAGGATTTTTGATGAGTTGCCGCAGGCCACAATCATTTCCGTCTCTCGACCTGATGCCGGCGATATCAGTCCCATGCTTCTTTCTTACACAATCGAGTGCCAGTACAAGCAGTTTAAATGGCGCATGCTGAAGAAAGCTTCCCATGTATTTTATTTGCATTTCGCATTAAAGAAACGGGCATTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCAAACAACAGTGCCCCAAGATGAGGATGGACCCGATGATGAGACCGATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGTGCAGCCCTGCCAATTATTCGGCCTGCCTTAGGAAGACAGCACTCTATGTCTGATAGAGCTAAGAATGCAATGCAAGGGTATCTGAATCACTTTTTGAGTAATATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTATCATTTTCACCAGAATACGGCCCAAAATTGAAAGAGGATTATGTCATGGTGAAGCACCTACCTAAAATTCCAAAGGAAGATGACTCTAGGAAATGTTGTCTATGCCCTTGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGGTTTTTGGCCTTGTTGGGAGATCCTTTTGATACTCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCGGATGGCAATGGAGATGGACGAGTATCCCTGGCTAAGGAAATTAAAGAGCGAAATCCATTACGACATTCATTTAAGGTGACATGTGGAAATAGGAATATTAGGATTAGAGCAAAGAATGGATCCAAGGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGTTTTGGCTCTTATGCTCCACCAAGAGGTTTGACTGAAGATGGTAGTAAGGCTCAGTGGTTCATTGATGGCCTAGCAGCTTTTGAAGCTATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATCTGAGGCGTCCTTTTGTTTCAAATGCTTCATCTAGGCTTGATGCTTTACTTGAAGCAAAAGCTAAGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGCAAGAGAAAACTTCTTGGCATCCATGAGAACGTGAGAGTATTGCGCTACCCCGACCACTTCTCCAGCGGTGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGATACACCCGAACATAAAGTTGGTGATTGTCCTCCTTCAGTATGGCCTGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAGAGATGAGTTGGATCGCAAGAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCACTCTGGGGACCATCTTGTAGAGACATAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAACGAGCAGGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATAGCCGAGAGTTGGAGGTTGAAAAGAAGAGTTTTGACAATTCTAGAGGAACAACAGTGCAGGATTCATTTTCTCGAGGATCATCTTTCCACGATATTCCATTGCTTTTGCCTCAAGAGGCTGATGGACAGGATGCTGAAAATGAAGGTCCAAAATTAAATGGACTGGAGCCCATTGTCAATCCCCTTGATCAGCCAAGTAAGGTCAGCAGTGGTCTCTCTTTTTCTTTCAGGAAGATCAAAGTTGAACCCGTAGGACCCGATATGCCTCTGAAAGGCTTTGTTGATGATCTTGACCATTTGGATTCCCATGGAAAGTTGTCTGGAGATGGGAAAACACATCATCGTGTCAAAAGTTCGGATTTTGAGTGGTGGGAAACACAAGACAGAGGACATCATGGTGGCTTCACAGATGAATCTGGACAAGTTGGTCCATGTGCTTCATGTCGTTGCCAGGTCATCAGAAGCGTCAGTCAGTGGTCTGCTGGGACAAGCCGAACTGAAGAAAGCATTCACACTGCATACTGCTCTCTTATTGAGAAAGCAGAACATTTTATCTACATCGAGAATCAATTTTTTATATCAGGCCTCTCGGGAGACGATTCAATACGGAACCGTGTATTAGAAGCATTATACCGCCGCATAATGAGAGCCTACCGTGAAAAGAAGATTTTTAGGGTCATTGTTGTCATACCACTCTTACCTGGATTTCAGGGGGGTCTGGACGATAGTGGTGCAGCATCGGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGTCGAGGACAGAATTCAATATTGCATAATCTTTATGATCTCCTTGGTTCAAAAGTTCATGATTATATATCATTTTACGGCCTCAGAGCTTATGGTAAACTCTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATTATTGATGATTGTATTGCTTTGATTGGATCGGCTAATATCAACGACAGAAGTTTACTTGGTAATAGGGATTCCGAGATTGCTATTGTTATTGAAGATAACGAACTCATCAATTCATATATGGGAGGACAACCATGGAAAGCAGGAAAATTTTGCTGGAGTCTACGTCTCTCTCTTTGGTCTGAACATCTCGGTCTTCGTCCCGGACAGATCAATCAAATAGTTGACCCAGTTGCTGATTCAACCTACAAGGATACGTGGATGGCAACTGCCAAGACAAACACAACAATATACCAAGATGTTTTTTCTTGCTTACCAAACGACCTCATAAATTCAAGAGCTGGACTGAGGCAGAGCGTTACGATCTGGAAAGAGCGACTGGGACACACGACAATAGATTTAGGAATTGCCCCTGAGAAGCTTGAGTTTTATAAGAATGGAGAAATAGAAAGGATTGATCCAATGGAGAGATTAAGCTCAGTGAAGGGGCATCTTGTTTCCTTCCCACTGGAATTCCTCAGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGTGAGTATTATGCATCTCAAGTTTTTCATTAA 3678 43.64 MADELLHDTGIRKRRVFVTRGLDQFPHGNGPPSIYSGPGWAIYGPQLVLLSLAAQDGRLLLSATYACPLLAQPSLYALSNSYFHPIRIQQKILFNCGRIRSNQAAVALDRLGMGSEQLMAGGGPRYVQMQSEPPSASMSSFFSFHHDAPEPTRIFDELPQATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDQTTVPQDEDGPDDETDPLHHDESSKNRDVPSSAALPIIRPALGRQHSMSDRAKNAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKEDDSRKCCLCPWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDGNGDGRVSLAKEIKERNPLRHSFKVTCGNRNIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTEDGSKAQWFIDGLAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPSCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNSRELEVEKKSFDNSRGTTVQDSFSRGSSFHDIPLLLPQEADGQDAENEGPKLNGLEPIVNPLDQPSKVSSGLSFSFRKIKVEPVGPDMPLKGFVDDLDHLDSHGKLSGDGKTHHRVKSSDFEWWETQDRGHHGGFTDESGQVGPCASCRCQVIRSVSQWSAGTSRTEESIHTAYCSLIEKAEHFIYIENQFFISGLSGDDSIRNRVLEALYRRIMRAYREKKIFRVIVVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYDLLGSKVHDYISFYGLRAYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGNRDSEIAIVIEDNELINSYMGGQPWKAGKFCWSLRLSLWSEHLGLRPGQINQIVDPVADSTYKDTWMATAKTNTTIYQDVFSCLPNDLINSRAGLRQSVTIWKERLGHTTIDLGIAPEKLEFYKNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6401420 6421120 - CrPI670011_06g012490.1 Cre06g1249 500711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1249 1225 SMART PH_update 328 456 IPR001849 -
Cre06g1249 1225 Pfam Phospholipase D Active site motif 589 616 IPR001736 GO:0003824(InterPro)
Cre06g1249 1225 SUPERFAMILY Phospholipase D/nuclease 434 708 - -
Cre06g1249 1225 PANTHER PHOSPHOLIPASE D 291 1206 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cre06g1249 1225 PIRSF PLD_euk 796 1225 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Cre06g1249 1225 PIRSF PLD_euk 146 740 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Cre06g1249 1225 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 589 616 IPR001736 GO:0003824(InterPro)
Cre06g1249 1225 Coils Coil 210 230 - -
Cre06g1249 1225 Gene3D Endonuclease Chain A 477 715 - -
Cre06g1249 1225 SMART pld_4 1022 1049 IPR001736 GO:0003824(InterPro)
Cre06g1249 1225 SMART pld_4 589 616 IPR001736 GO:0003824(InterPro)
Cre06g1249 1225 Pfam PLD-like domain 1023 1071 IPR025202 -
Cre06g1249 1225 CDD PH_PLD 305 452 - -
Cre06g1249 1225 MobiDBLite consensus disorder prediction 234 265 - -
Cre06g1249 1225 SUPERFAMILY PH domain-like 360 452 - -
Cre06g1249 1225 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1022 1049 IPR001736 GO:0003824(InterPro)
Cre06g1249 1225 Gene3D - 355 452 IPR011993 -
Cre06g1249 1225 FunFam Phospholipase 856 1076 - -
Cre06g1249 1225 SUPERFAMILY Phospholipase D/nuclease 862 1071 - -
Cre06g1249 1225 CDD PLDc_vPLD1_2_yPLD_like_1 482 627 - -
Cre06g1249 1225 Gene3D Endonuclease Chain A 853 1079 - -
Cre06g1249 1225 ProSiteProfiles PH domain profile. 363 454 IPR001849 -
Cre06g1249 1225 CDD PLDc_vPLD1_2_yPLD_like_2 882 1066 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1249 Cre-Chr6:6401420 Cre08g1349 Cre-Chr8:26532655 2.00E-39 dispersed
Cre02g1843 Cre-Chr2:31716481 Cre06g1249 Cre-Chr6:6401420 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1249 K01115 - csv:101211856 2204.48