Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1255 ATGTCAAACGGATTTGCCAATGGCGAAGGTGATAAAAAGAAGAAGAAAATCGCCATCGTTAGTGTCTCTTCTTTAATCCTGGTGGCAATGGTTGTCGCCGTCACCGTCGGCGTCAACAGTGCACCTCACGAAGAGCACAGCGACGATCACGGTGGCGAGACTCATGAGATTTCATCAACGACTAAAGCAATCCAAGCCATTTGTCAACCAACGGATTACAAAGAATCCTGCGAGAAGAGTCTAATGGCAGAAGCCGGTAATACAACAGACCCAAAAGAGCTAGTGAAAGTGGGATTCAAAATCGCCACGAGAAATCTAAACGAGGCGATAAGAAATTCCACCACGCTTCAAGAATTAGCCAAAGACCCAAGAACCAACCAAGCCCTTCAAAATTGTCGTGAGCTTTTAGAGTATGCGATTGATGATTTGAACGAATCGTTCGAAAGAATCGGGACCTTCCAAATGTCCAAACTGGATGAGTTCGTTGGGGATTTAAAGATTTGGCTGAGTGGGGCCATGACGTACGAACAAACTTGTTTGGATGGATTTGAAAACACGACAGGCAATGCTGGGGAGAGAATGAAAGAGTTTCTGAAGTCCGCTCAAGAAATGACAAGCAACGGTCTTGCAATAGTGAATGAATTGTCTGGCATTTTGGGGACACTCCAAATCCCTGGAATGAGTGGACGACGACTTTTGGAAGACGAAATGCCATCATGGGTGAGCGAGGGAAAGAGGCGACTGATGCAGGCAGGTGCGGCATCCATGAAGCCCGATTTGGTGGTGGCTCAAGATGGGAGTGGGAAGTACAAGACTATAAATGAAGCTTTGGTTGATGTGCCTTTGAAGAGTAACAAAACGTTTGTGATCTATGTGAAGGCTGGAATCTACAAGGAAATTGTTGTTATTCCAAAGGCTATGACTCATCTGACCATGTACGGTGACGGTCCAACCAAAACGGTGGTTACTGGTAGCTTAAACTTTATTGACGGTATTCAAACATTCAAGACGGCTACCTTCTCTGCAATTGGAGCTAATTTCTACGCTAGAGACATGGGATTCCAGAACACCGCTGGGGCTGCAAAGCACCAAGCCGTAGCCCTACGAGTCCAATCCGATAGATCAATCTTCTACAACTGTCAAATAGATGGCTACCAAGATACCCTCTACGCACACGCTCACCGTCAGTTCTACAGAGACTGCACAATCAGTGGCACCATCGACTTCGTGTTCGGTAACGCCGCCACCATTTTCCAGAACTGCAAGCTGGTGGTCCGAAAGCCAATGGATAACCAACAATGCATCGTCACGGCTCACGGCCGTCTCAACCGCCGTGAACCCACAGCATTGATCTTCCAGAGCTGCCATTTCATGGGTGACCCTGCTTACTTGCCCTTCAAGAACATCAACAAGGCATACTTGGGGCGTCCTTGGAAGGAATATTCACGAACCATTATAATCGGGTCTCAAATAGACGATATCATCCAGCCTGAAGGATGGTTGCCATGGATGGGCGATTTTGGGCTCAAAACCTTGTTCTACGCCGAGGTACAGAACAAAGGGCCAGGGGCTGATGAAAGCAAGAGAGTGAAGTGGCGAGGAATTAAACATATTACGCCACAACACGCCGCGGATTTCACTCCTAGACGATTTATTGATGGCGATGCTTGGATTCCTGCTAAGGGAATTCCCTACTCTTCTGGAATGATGTGA 1713 47.23 MSNGFANGEGDKKKKKIAIVSVSSLILVAMVVAVTVGVNSAPHEEHSDDHGGETHEISSTTKAIQAICQPTDYKESCEKSLMAEAGNTTDPKELVKVGFKIATRNLNEAIRNSTTLQELAKDPRTNQALQNCRELLEYAIDDLNESFERIGTFQMSKLDEFVGDLKIWLSGAMTYEQTCLDGFENTTGNAGERMKEFLKSAQEMTSNGLAIVNELSGILGTLQIPGMSGRRLLEDEMPSWVSEGKRRLMQAGAASMKPDLVVAQDGSGKYKTINEALVDVPLKSNKTFVIYVKAGIYKEIVVIPKAMTHLTMYGDGPTKTVVTGSLNFIDGIQTFKTATFSAIGANFYARDMGFQNTAGAAKHQAVALRVQSDRSIFYNCQIDGYQDTLYAHAHRQFYRDCTISGTIDFVFGNAATIFQNCKLVVRKPMDNQQCIVTAHGRLNRREPTALIFQSCHFMGDPAYLPFKNINKAYLGRPWKEYSRTIIIGSQIDDIIQPEGWLPWMGDFGLKTLFYAEVQNKGPGADESKRVKWRGIKHITPQHAADFTPRRFIDGDAWIPAKGIPYSSGMM 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6464256 6465968 + CrPI670011_06g012550.1 Cre06g1255 500717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1255 570 SMART PMEI_2 59 211 IPR006501 GO:0004857(InterPro)
Cre06g1255 570 MobiDBLite consensus disorder prediction 41 61 - -
Cre06g1255 570 FunFam Pectinesterase 60 216 - -
Cre06g1255 570 Pfam Plant invertase/pectin methylesterase inhibitor 62 211 IPR006501 GO:0004857(InterPro)
Cre06g1255 570 PANTHER PECTINESTERASE 15 560 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre06g1255 570 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Cre06g1255 570 MobiDBLite consensus disorder prediction 42 56 - -
Cre06g1255 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Cre06g1255 570 CDD PMEI-like_3 66 217 - -
Cre06g1255 570 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Cre06g1255 570 FunFam Pectinesterase 253 569 - -
Cre06g1255 570 Pfam Pectinesterase 259 555 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre06g1255 570 NCBIfam pectinesterase inhibitor domain 59 215 IPR006501 GO:0004857(InterPro)
Cre06g1255 570 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Cre06g1255 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
Cre06g1255 570 Gene3D - 253 569 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1255 Cre-Chr6:6464256 Cre09g1814 Cre-Chr9:36541866 2.30E-128 dispersed
Cre11g0517 Cre-Chr11:2126606 Cre06g1255 Cre-Chr6:6464256 2.90E-137 transposed
Cre05g0766 Cre-Chr5:6754181 Cre06g1255 Cre-Chr6:6464256 2.90E-203 wgd
Cre06g1255 Cre-Chr6:6464256 Cre09g0531 Cre-Chr9:4970996 3.30E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1255 K01051 - csv:101221958 1032.32