Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1265 ATGAATTCTGAGCTGCTTCGAAGAAATCAACCGAATCCGACTCCACAAACTCAAAATCCGGTGATTGATTCACCAAGAACTCCGGCTGGTTCTTCCGGCAAATCCAGGAGTCCGATCCATTACATGCTTCGCGAGCAGCGTCTTCTCTTTGTTTTTGTCGGTATCGCCATTGCAACTCTGTTCTTCAATGTCGGTCGTTTCGCTTTTCCGCCGGAGCTGCGTGATGATCACCGTTATCAAGCGGCGATGAATCCGTTCATTCAATTGGATTCGACGATCCCGATGCGGAGAGTTTTGTATGAAACTCGCCGTGAAGGATCGTTAGGACGGGTGAATTTGGCGGGGAAAGTCCCGCCGGGATTGAAGAAGAGGAACCTGAGGATTGTCGTTACTGGTGGCGCCGGATTCGTCGGAAGCCATCTCGTGGACCGTTTGATTGAGAGAGGCGATAGCGTGATCGTCGTTGATAATTTCTTCACTGGACGGAAGGATAATCTGGTTCATCATTTCGGAAACCCGAGATTTGAACTGATTCGACACGACGTCGTTGAGCCGCTTCTATTGGAAGTTGATCAGATCTACCACTTGGCTTGCCCTGCTTCTCCTACAAATGTTGTCGGCACACTGAACATGCTAGGGCTTGCGAAGAGAGTCGGCGCTCGCTTTTTGCTCACTAGCACCAGCGAAGTCTACGGTGATCCGCTCCAACACCCGCAGGCTGAAACCTACTGGGGCAACGTCAATCCTATCGGTGTACGGAGCTGCTACGATGAAGGAAAGCGCACGGCGGAGACTTTGACAATGGATTACCACAGAGGCCTTGGCATTGAGGTGCGGATTGCTCGGATCTTCAATACTTATGGACCACGGATGTGCATCGATGACGGTCGGGTTGTGAGCAATTTTGTAGCACAGGCATTGAGAAAGGAGCCGTTGACAGTATATGGGGACGGCAAGCAAACCCGGAGTTTTCAATATGTTTCTGATCTGGTGGAGGGGTTAATGAAACTTATGGAAGGTGAGCACGTGGGCCCTTTTAATCTCGGCAACCCCGGCGAATTCACCATGCTCGAACTTGCCCAGGTAGTACAAGAGACAATAGATCCAAATGCAAGGATAGAGTTCAGGCCAAACACAGAAGACGACCCACACAAAAGAAAACCCGATATTTCCAAAGCTAAGGACCTTCTTGGTTGGGAGCCCACCGTGTCCCTTCGGAAGGGCCTTCCCCTTATGGTTTCCGACTTCCGCCAACGCATCTTCGGCGATTCCAAAGACGACAGCTCCTCCGCCGCCGTCGCCGCCCTTCTCTCCACCACCACCTCCTCGGTCTAG 1335 51.61 MNSELLRRNQPNPTPQTQNPVIDSPRTPAGSSGKSRSPIHYMLREQRLLFVFVGIAIATLFFNVGRFAFPPELRDDHRYQAAMNPFIQLDSTIPMRRVLYETRREGSLGRVNLAGKVPPGLKKRNLRIVVTGGAGFVGSHLVDRLIERGDSVIVVDNFFTGRKDNLVHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMKLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDISKAKDLLGWEPTVSLRKGLPLMVSDFRQRIFGDSKDDSSSAAVAALLSTTTSSV 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6565613 6571334 + CrPI670011_06g012650.1 Cre06g1265 500727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1265 444 MobiDBLite consensus disorder prediction 1 37 - -
Cre06g1265 444 Gene3D - 122 236 - -
Cre06g1265 444 Gene3D - 237 421 - -
Cre06g1265 444 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 421 IPR036291 -
Cre06g1265 444 Pfam GDP-mannose 4,6 dehydratase 130 410 IPR016040 -
Cre06g1265 444 MobiDBLite consensus disorder prediction 1 34 - -
Cre06g1265 444 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 118 420 IPR044516 GO:0005737(PANTHER)|GO:0042732(InterPro)|GO:0042732(PANTHER)|GO:0048040(PANTHER)|GO:0048040(InterPro)|GO:0070403(PANTHER)|GO:0070403(InterPro)
Cre06g1265 444 MobiDBLite consensus disorder prediction 374 393 - -
Cre06g1265 444 CDD UGD_SDR_e 127 417 - -
Cre06g1265 444 FunFam UDP-glucuronic acid decarboxylase 1 236 421 - -
Cre06g1265 444 FunFam UDP-glucuronic acid decarboxylase 2 122 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1265 K08678 - - csv:101222435 776.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1265 Cre-Chr6:6565613 Cre10g2193 Cre-Chr10:36463374 9.90E-167 dispersed
Cre10g1251 Cre-Chr10:25457053 Cre06g1265 Cre-Chr6:6565613 3.10E-181 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g183 . . . . . . . . . Cmo17g00321 . . . . . . . . . . . . . . Cla06g00473 Cam06g0508 Cec06g0509 Cco06g0511 Clacu06g0492 Cmu06g0493 Cre06g1265 . . . . . Csa06g01816 Chy11g01517 . . . . . . . . . . . . . Cma17g00331 . . Cpe12g00281 . . . . . . . . . . . . . . . Lsi09g01438 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000444 4 3 3 5 4 3 5 3 3 4 3 3 5 3 3 5 3 9 5 3 5 4 4 3 3 4 2 8 4 4 120