Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1267 ATGGAGGAAGCCATTTCTCGAATCCTCACGGAGCTTGAAGAAGTTCGCCATTTCGGCGACTCTACAACTCTCCATTCCCAACCTCCGCCGCCGCTCTCCGATTCCTCTCTCTTCGACCTTCAAAGCTTATTAGACAACTCAATCGGTACCGATGAACAACCACCACTCGATCGCCTCTACGACGACCTCTCGGCCAAATCCCTCTCTCCGTCTTCTCTTACCCGAGCCATCGCCTCCGCCATGGACGAGTCTTCCACTCGCGTTTCGATTTTAGCTTCTAGAGTCTATCTCTCCCTTCTTCTGGCCCCAAATGCACCGGTGTTCACGCTGTTCAATCCGATGGATTTTCTTTCGTTTCTCAGGTCGATGAGGCGATTATTGAAGCAGCGACCTCGGGCTCAACCGGACCAGGATGATTCTAATAAGGAGTCTAATGCTCCCAAACGGAAGAGGAAAGCCGGTGTTAAGGGTAAGGGTTTGGGGAATTGTGCGCTGAGGCAGAGTTTTAGTGGCAGGTATGATGATGGTGAATTCGATGCAAGAGTCTTGTATCCTGTACTTGAGAGGTTAGAGAATTTAATGAGTTTGATTCATTTGGATCGATTTCCGGATAGTTTGAAATCTTTGATTGAAACTGTAATTGATATTCCAGTTTTGGCACTTGAAGTATGCACTAATTTAAGTATCTATAGTAAGTTCACTAATTTATGTTCACGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATCTATCGAGTACTGCCGTTGAGGTGATTAAGTCTCTGTCACCATTGATTCTTAATCATAAGGATCAGGCGCGAGCATTTGCGCTAGGGTTTGTGACTATTCAAATAGCAAATGTAGCAAAGGAATCAGATGGTGTTAAGAGTGCTCTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCTCCTGAGAAATCTGAGCCTCGTAGTTTAGCAGTTGATTCAATAATGGAGGTTGTTAAAGTGATGGAATTCCCCGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCAGAGGAAAGTCTAATCTTAGGCTGTTAGCGGTTGATCTCATCTCAATGCTGATAACGTCCTTGAGCGATCCAATGGCCATTGATTCCGAAAGCGAACTAAAGGATTCGTGGGGATTTGGGTGCTTGGTGGCATTGGTTCAACGTTGTTCAGATGCCAGTGCTCCAATTCGTGCTCGAGCACTTACCAACTTAGCTCACCTTGTGGTGTTCTTGTCTGAGAATGACAAGAATAAGGCCTTACTGGAGGAAGTGTTGGGGTCTGGTGACAGACATTGCAAAAAAAGTGGAGGTGAAATTCATGCTCTTTTGCGAAGAAGGTGTATGGATGAGAAGGCGGCAGTTAGGAAGGCTGCATTATTTCTGGTTACCAAGTGCACAACCCTCCTTGGTGGAGCAATGGATGGAGACATGCTGAAAACGGTGGGAATTGCTTGTTCTGACCCACTTGTTAGCATACGGAAAGCTGCAATGTCGGCTCTCTCAGAGGCCTTTCGAAGATTCCCAGATGAAAGTGTCATGGTCGAGTGGCTACACTCTATTCCACGTTTAATTGCTGACAGTGAATCTAGCATTCAAGAAGAGTGTGAACACTTGTTTCAAGAACTAGTACTAGACCGGTTGTCTAGAGTTGGATCTTCAAGTTTACCTAAAGGAGCATTGAATCTTCTTAAAGAGATGAGTCATGCAGAGGTAATTCCTTGGGTGAGGAAAGTTTGTGCTAATTTGGGAAAAAAGAAAAAATTAAAACGCACAATTGCGGATTCACTTCAGATAATTATAAAGACATCTGAATCCTTTTGGCTAAGCCAATCTTTGCCTCCAGAGAGGTGGACAGCTCCCACAGGTGCCTGGTTCCTGCTGGCAGAAGTATCGACTTATCTTGGGAAAGCCGTTGATTGGGAGTTTCTTCATCATCACTGGAAACTCCTTGATGATCATGGTAGGACTGAGTTTCAGAGTCCAGTGGCTCAAGTAGGTTTATTTGGAGAGGAAAACAACTCAGAGTCAAATTCCGTCACTTGGGCTCAAGATCGAGTTTTTCTCTTACAAACCATTTCTAATGTTTCTGTTGAGCTGCCTCCAGAACCTGCAGCAGAATTAGCTCATGAATTGCTTAAAAGGGTTGAAGAATTCAACATGCATTCAACGGAGGTGAATGCACATGTAAAAACACTTAAAACATTGTGTAAGCGGAAGGCTTTGCAATCTACTGAAGCCGATGCCCTTATCCTAAAATGGGTAAACCAGCTGCTTTCCAAAGCCTCTCACATATTGGAGAAGTACATATCCAAGCATGCAGAAGCAAACAAAGATGTGAACTTCGTAACTCCACCTCCTAAAAGTGGTAGTCGAATTGGGAAGAAAGCAACTGCCAGGAGCAAGTCCTTGTCCCGAGCAATCACTGCAGCTTACACCATTGGCTCTTTGATTCTCATTTGTCCATCGGCTGACATGACCACCATCATACCACTTCTCCACACCATTATCACTTCTGGAAACCGTGATCCCAAATCTAATAAACTACCAATTCAAACTGCATCTCTAAAGGAAACTGCCCCTTCTTTATACGTTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTGCTGACGAGAAGCGTGCAAAGAGTTACATTCCTCTATTTGTACAGGAGCTTGGAAACAGTGATTGTGCAGCTCTTCGCAACAACCTTATTATCACAATGGCAGATTTTTGTGTACGTTATACTGCTCTAGTTGACTGCTACCTTACGAAAATCACAAAGTGCCTTCGGGACCCTTGTGAACTTGTCAGAAGACATACATTCATACTTCTATCGAGATTACTACAGAGGGACTATGTGAAATGGAGAGGGGTTTTGTTTCTTCGGTTTCTCTTGTCACTTGTTGATGAATCAGAGAAGATTCGTCAACTAGCAGATTTCCTTTTTGGGAACATTTTAAAAGTGAAGGCACCACTTTTGGCTTACAACAGTTTTGTAGAAGCAATTTATGTTTTGAATGACTGTCGTGCTCATTCTGGACATAGCGATTCAAATGCTTCACGAGCTGAAAGTCGACTATTCTCCATCCGAGGCAATGATGAAAGGTCGAGGATCAAGAGAATGCACATTTATGTTTCTCTGTTGAAACAAATGGCTCCTGAGCATCTTTTGGCAACCTTTGCAAAGTTATGCGCAGAAATTCTTGTTGCAGCATCAGATGGTATGCTCAATATAGATGATACCACTGCACGGTCTGTTTTACAGGATACCTTTGATATTCTTGCTTGTAAAGAGATCCGACTATCGGTAAATCGAGTATCATCATCAGAATCTGGTGATTTAGATGAGGAAGGAGGTGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGGTCATCACTCATGCAGTGAGAAAGAGTCTCATTCAAAGCACCATACCCATCTTCATTGAGTTAAAAAGGCTAATGGAAAGCAAGAATAGCCCCCTTATAGGTTCCCTCATGGAATGTCTTCGAGTTCTTCTCAAAGACTACAAGAACGAAATCGATGACTTATTGGTAGCCGATAAGCAACTTCAGAAAGAGCTCCTCTATGACATTCAAAAGTATGAATCTACCAAAGCCAAGTCAGCTGCTGCCGAGGCGGTCAACGAGATGCATAAGTCAACTAACTATCTTTCGCCTGAGGCTCCTTCTCAAGCTAGAAGTGCCATTAACAAGCTAACCTCAAAGATTCAAAATGACTCGAAAGTTGCTTCAGCCATTGCTGATGCAGCTGCTGCAGCCACAGCAAAATCTGTGCTTAGGGAAGTGAATAGAGGGGCTTCGACACCGCCTCTTGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAATAATGACACAAATACCTCACATTTTAATGTGATTGAATCTTTAAGAAAACGTCAGTCTTTTGAAAACGACGGCGGCCTTACGGGTAGAAGTTCAACTATTGTTTCTGCATCTGGTTCATCTGAAAGGATGTCAACATCTGCAATTATGGAAAGAATTCCAAGCAAGTGGCAATGTCCGGTTTGGCAAGCTTCATGGAGAAATTATAGGATTTGGGATAATGCAAGTGGAAAGTTAAAAACTCACACTGGTCTTGCTGTCAGCAACAGGCATACCTACATGTTTTCAGCTGGTGATGACAAACAAGTTAAATGCTGGGACATGGAACCGAATAAGGTAATTTGTCATTACCATGGTCATCTGAGTGGTGTTTACTATTTGGCTCTTCATCCAACAATCGATGTTTTGCTTACTGGGGACATGATTCTGTCTGCTGGTTTTCAGCAGAAGACTATAATCAATGCAATAACTGTCAATGAGGAGGGTGTTATGGTGACTGGAGACGAGGAAGGAGGCGAGAATGGAGGAGCATTTGCTGCTAGAGAAAAGATCACCACTCATGAACCAATCAACAACTTCAGAAAGAGCTTCTCGATGACATTCAGAAGTATGAATCAATCTAGGCCAACTGCTGCAGCCACGGCGAAGTGTGTGCTTAGGAAAGTGAACAGAGGGGCTACGACACCGCCTCTCAATTCTCTAAGTTTGCCAAAACTCAAGTCTCATACTGGTGGAAACAATGGCACAACAGCCCGACTCCCAGCTCGGTGTTCATCGGTAAGAAATCTTTTGTACGAATTCGATCTTCAGAATGAATCAAGATCCTCATCTTTCTCCATGTTTCAAGCCATCAATCTCTTTATATCAGGTTTTTTGGAAGATTGTGTCGGTGCGATTATGGATGGGAATAAGGACGAAGCTTTAAGATGTATTCGCATGGCGGAAGAAGCAATTGCATCGGGGAATAAAGAGCGAGCACTTAGATTCATTAAAATTGCTTGTCGCCTTAATCAGAGTTTGCAAGTGGATGAGCTATTGACGGCGTGCGAAGAGATCGGTTCGGGGTCGCCTTCATCTTCTTCCGATGAGAAACGCGCGGGAAAAGTTGAGAGTGTTTCTGGTTCAGTGAAACATGTTGATGGTTTGAATGGTGAACGTAATTACACTATAGAACACGTTCAATTGATTAGGCAGATAAAAACAACCAAGGACTATTACAGAATTCTTGGTGTGGAGAAAACTAGTTCGGCTGAAGAGATTAAGAAAGCTTATAAGAAATTGTCCTTGAAAGTTCACCCTGATAAAAACAAGGCTCCTGGTTCAGATGAAGCATTCAAGAAGTTATCCAAGGCTTTCATGTGTTTGAGCGATGATACTTTGAGGAGGCAATATGATCACACGGGTTTGGTTGATCAGTATGAGTACAACCAACAGCATAATGTAAGGCATAGGAGAAGGAGAACGGGTCATGATTTGTTTGAAGAAAATTTCGATCCTGATGAGATACTCAGAGCGTTCTTTGGGCAGGGAAATATGTTTCAGACGAGTCGTGCTTATACTTATAGAACTGGAGGTGCGGGAAGCCAACAGAGGACAGAATCTGATGGGGGAGGTCCCAGCTTGTTGATTATTCTTCTAATGTTACCATTCTTGTTAATTTGCTTGTTGGCTTATATGCCATTTCCAGAGCCGGACTATGCTTTGCATAAAAACCTATCCTATAGTGTTCCTATGGCTACGGAGAAACATGGAGTGGAATTTTTTGTTAAATCATCTGATTTTGATGTAAGATATCCTCTTGGAAGCCCAGGTCGAGCTGAAATAGAGAATAGTGTGCTGAGGGATTATAGAAACATGGTTTGGCGTTATTGTCATGTAGAACTCCAGAGACGCCAGTGGAATAGAAATCTCCCAACTCCTCACTGCGAGAAGCTGAATAATCTCGGTGTAGCATAA 5862 43.26 MEEAISRILTELEEVRHFGDSTTLHSQPPPPLSDSSLFDLQSLLDNSIGTDEQPPLDRLYDDLSAKSLSPSSLTRAIASAMDESSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFLRSMRRLLKQRPRAQPDQDDSNKESNAPKRKRKAGVKGKGLGNCALRQSFSGRYDDGEFDARVLYPVLERLENLMSLIHLDRFPDSLKSLIETVIDIPVLALEVCTNLSIYSKFTNLCSRILSATLRPEHGDLSSTAVEVIKSLSPLILNHKDQARAFALGFVTIQIANVAKESDGVKSALVNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLAVDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAHLVVFLSENDKNKALLEEVLGSGDRHCKKSGGEIHALLRRRCMDEKAAVRKAALFLVTKCTTLLGGAMDGDMLKTVGIACSDPLVSIRKAAMSALSEAFRRFPDESVMVEWLHSIPRLIADSESSIQEECEHLFQELVLDRLSRVGSSSLPKGALNLLKEMSHAEVIPWVRKVCANLGKKKKLKRTIADSLQIIIKTSESFWLSQSLPPERWTAPTGAWFLLAEVSTYLGKAVDWEFLHHHWKLLDDHGRTEFQSPVAQVGLFGEENNSESNSVTWAQDRVFLLQTISNVSVELPPEPAAELAHELLKRVEEFNMHSTEVNAHVKTLKTLCKRKALQSTEADALILKWVNQLLSKASHILEKYISKHAEANKDVNFVTPPPKSGSRIGKKATARSKSLSRAITAAYTIGSLILICPSADMTTIIPLLHTIITSGNRDPKSNKLPIQTASLKETAPSLYVQAWLTMGKICLADEKRAKSYIPLFVQELGNSDCAALRNNLIITMADFCVRYTALVDCYLTKITKCLRDPCELVRRHTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRQLADFLFGNILKVKAPLLAYNSFVEAIYVLNDCRAHSGHSDSNASRAESRLFSIRGNDERSRIKRMHIYVSLLKQMAPEHLLATFAKLCAEILVAASDGMLNIDDTTARSVLQDTFDILACKEIRLSVNRVSSSESGDLDEEGGESGGASAARGKVITHAVRKSLIQSTIPIFIELKRLMESKNSPLIGSLMECLRVLLKDYKNEIDDLLVADKQLQKELLYDIQKYESTKAKSAAAEAVNEMHKSTNYLSPEAPSQARSAINKLTSKIQNDSKVASAIADAAAAATAKSVLREVNRGASTPPLGSLSLPKLKSRTGGNNDTNTSHFNVIESLRKRQSFENDGGLTGRSSTIVSASGSSERMSTSAIMERIPSKWQCPVWQASWRNYRIWDNASGKLKTHTGLAVSNRHTYMFSAGDDKQVKCWDMEPNKVICHYHGHLSGVYYLALHPTIDVLLTGDMILSAGFQQKTIINAITVNEEGVMVTGDEEGGENGGAFAAREKITTHEPINNFRKSFSMTFRSMNQSRPTAAATAKCVLRKVNRGATTPPLNSLSLPKLKSHTGGNNGTTARLPARCSSVRNLLYEFDLQNESRSSSFSMFQAINLFISGFLEDCVGAIMDGNKDEALRCIRMAEEAIASGNKERALRFIKIACRLNQSLQVDELLTACEEIGSGSPSSSSDEKRAGKVESVSGSVKHVDGLNGERNYTIEHVQLIRQIKTTKDYYRILGVEKTSSAEEIKKAYKKLSLKVHPDKNKAPGSDEAFKKLSKAFMCLSDDTLRRQYDHTGLVDQYEYNQQHNVRHRRRRTGHDLFEENFDPDEILRAFFGQGNMFQTSRAYTYRTGGAGSQQRTESDGGGPSLLIILLMLPFLLICLLAYMPFPEPDYALHKNLSYSVPMATEKHGVEFFVKSSDFDVRYPLGSPGRAEIENSVLRDYRNMVWRYCHVELQRRQWNRNLPTPHCEKLNNLGVA 1953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6577573 6592802 + CrPI670011_06g012670.1 Cre06g1267 500729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1267 1953 MobiDBLite consensus disorder prediction 1281 1309 - -
Cre06g1267 1953 Gene3D - 1363 1455 IPR015943 GO:0005515(InterPro)
Cre06g1267 1953 SMART dnaj_3 1705 1762 IPR001623 -
Cre06g1267 1953 ProSiteProfiles dnaJ domain profile. 1706 1770 IPR001623 -
Cre06g1267 1953 Pfam Domain of unknown function (DUF1977) 1864 1934 IPR015399 -
Cre06g1267 1953 MobiDBLite consensus disorder prediction 1532 1554 - -
Cre06g1267 1953 Gene3D DnaJ domain 1703 1821 IPR036869 -
Cre06g1267 1953 Coils Coil 1176 1203 - -
Cre06g1267 1953 MobiDBLite consensus disorder prediction 129 150 - -
Cre06g1267 1953 SUPERFAMILY Chaperone J-domain 1702 1782 IPR036869 -
Cre06g1267 1953 PANTHER CONDENSIN 13 1324 IPR026971 GO:0000779(PANTHER)|GO:0000799(PANTHER)|GO:0007076(PANTHER)|GO:0007076(InterPro)|GO:0010032(PANTHER)|GO:0042393(PANTHER)
Cre06g1267 1953 MobiDBLite consensus disorder prediction 128 158 - -
Cre06g1267 1953 Pfam non-SMC mitotic condensation complex subunit 1 908 1065 IPR032682 -
Cre06g1267 1953 Gene3D - 389 556 IPR011989 -
Cre06g1267 1953 PRINTS DnaJ domain signature 1708 1726 IPR001623 -
Cre06g1267 1953 PRINTS DnaJ domain signature 1726 1741 IPR001623 -
Cre06g1267 1953 PRINTS DnaJ domain signature 1742 1762 IPR001623 -
Cre06g1267 1953 Pfam DnaJ domain 1706 1767 IPR001623 -
Cre06g1267 1953 SUPERFAMILY WD40 repeat-like 1362 1442 IPR036322 GO:0005515(InterPro)
Cre06g1267 1953 SUPERFAMILY ARM repeat 340 1192 IPR016024 -
Cre06g1267 1953 CDD DnaJ 1706 1759 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1267 K11491 - - csv:116405799 1996.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1267 Cre-Chr6:6577573 Cre06g1963 Cre-Chr6:26910392 2.00E-57 dispersed
Cre06g1264 Cre-Chr6:6552375 Cre06g1267 Cre-Chr6:6577573 5.40E-21 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g188 . . . . . . . Bma05g01033 . Cmo17g00319 . . . . . . . . . . . . . . Cla06g00476 Cam06g0510 Cec06g0511 Cco06g0514 Clacu06g0494 Cmu06g0496 Cre06g1267 . . Cone7ag0143 Cone4ag0147 . . Chy11g01513 . . . . . Bpe05g00834 . . . . . . . Cma17g00329 . Car17g00303 Cpe12g00279 . Bhi12g02049 . . . . . . . . . . . . . Lsi09g01433 . . Cme11g02015
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010431 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 2 1 1 31