Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1299 ATGTCTCTCAAGAGCATCTTCCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGGACGCTCTGGACCAAAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCCGGGAGGTTTTGATCAGAATCGAGGCGTCCGAGACCTTTTGGCCGCCTAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACCAGTGCACTAAGTGATGACGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCGGGAGCCAAGATCACTAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCGAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAATTAAATGTGTTGGGATCAAGGGGTCCAAGGAGAATGCAATGTATCATGGACGCTATTCCCGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCAACGCCGACCGAACTTTCTTTGAGCAATGTGGAATTGTTTCCATCATTCCCATTCCTAAGGTCAAAATCCAATGCCGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCATGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCGGAAAATGATACACCTACACCAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCACACATCGTTTAACAGGGAATGGACGCTCAATTTGAAGGTCTACTGA 1134 47.09 MSLKSIFQDMRSRSRCVVQDASAPEPRDALDQSCWANMPQELLREVLIRIEASETFWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDTPTPEHEKIILQFGKVGKDLFTMDYHTSFNREWTLNLKVY 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6911502 6914610 - CrPI670011_06g012990.1 Cre06g1299 500761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1299 377 CDD F-box_AtTLP-like 35 79 - -
Cre06g1299 377 SUPERFAMILY Tubby C-terminal domain-like 84 364 IPR025659 -
Cre06g1299 377 Pfam Tub family 97 363 IPR000007 -
Cre06g1299 377 Gene3D Tubby Protein; Chain A 95 368 IPR025659 -
Cre06g1299 377 PANTHER TUBBY-RELATED 22 366 - -
Cre06g1299 377 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
Cre06g1299 377 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Cre06g1299 377 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 316 332 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1299 K19600 - - csv:101203437 702.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1299 Cre-Chr6:6911502 Cre08g0325 Cre-Chr8:10012404 2.10E-109 dispersed
Cre05g0707 Cre-Chr5:6252309 Cre06g1299 Cre-Chr6:6911502 3.90E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0325 . 1 431 TUB Transcription Factor Family AT1G76900 73.0 8.9e-179 623.6
Cre08g0649 . 1 432 TUB Transcription Factor Family AT1G76900 69.6 8.3e-169 590.5
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 1.1e-168 590.1
Cre05g0707 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 1.6e-111 400.2
Cre05g1169 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.8e-102 367.1
Cre08g0325 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 5.2e-94 341.3
Cre08g0649 . 175 432 TUB Transcription Factor Family AT1G25280 70.4 2.6e-93 339.0
Cre05g0707 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 5.2e-70 261.5
Cre05g2058 . 295 522 TUB Transcription Factor Family AT1G25280 53.8 1.6e-66 250.0
Cre04g1574 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 7.3e-64 241.1
Cre06g1299 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.6e-53 206.1
Cre05g0707 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 2.1e-96 349.4
Cre06g1299 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.5e-86 316.6
Cre08g0325 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 4.1e-84 308.5
Cre08g0649 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.6e-83 306.6
Cre05g1169 . 113 428 TUB Transcription Factor Family AT5G18680 52.5 3.9e-82 302.0
Cre05g2058 . 231 522 TUB Transcription Factor Family AT5G18680 51.9 3.7e-77 285.4
Cre07g1395 . 117 383 TUB Transcription Factor Family AT5G18680 51.0 2.1e-67 253.1
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 1.3e-138 490.0
Cre05g2058 . 117 522 TUB Transcription Factor Family AT2G18280 59.0 4.9e-125 444.9
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 1.5e-118 423.3
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 3.2e-116 415.6
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 4.2e-116 415.2
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G18280 50.9 9.6e-113 404.1
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 7.1e-100 361.3
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G18280 52.3 1.2e-94 344.0
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 5.7e-161 564.3
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.3e-146 515.8
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.5e-132 469.9
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 1.4e-130 463.4
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 4.0e-130 461.8
Cre05g2058 . 126 522 TUB Transcription Factor Family AT2G47900 55.4 5.1e-117 418.3
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 4.0e-114 408.7
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G47900 51.8 3.6e-99 359.0
Cre09g0327 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 5.5e-73 271.6
Cre08g0325 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.4e-147 519.6
Cre05g1169 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 4.6e-146 514.6
Cre08g0649 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 2.0e-141 499.2
Cre05g0707 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 1.4e-105 380.2
Cre05g2058 . 184 522 TUB Transcription Factor Family AT1G43640 50.1 2.5e-99 359.4
Cre06g1299 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.7e-93 339.3
Cre05g2058 . 150 522 TUB Transcription Factor Family AT1G47270 64.4 1.1e-134 476.9
Cre04g1574 . 33 413 TUB Transcription Factor Family AT1G47270 57.0 2.5e-121 432.6
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G47270 51.9 5.0e-114 408.3
Cre08g0325 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 2.7e-112 402.5
Cre08g0649 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 2.7e-112 402.5
Cre05g0707 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.7e-104 375.9
Cre07g1395 . 1 383 TUB Transcription Factor Family AT1G53320 70.0 1.1e-153 540.0
Cre05g0707 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 4.1e-97 351.7
Cre06g1299 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.9e-82 301.6
Cre05g1169 . 117 428 TUB Transcription Factor Family AT3G06380 53.5 1.9e-81 299.7
Cre08g0649 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 5.4e-81 298.1
Cre08g0325 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.6e-80 295.0
Cre05g2058 . 235 522 TUB Transcription Factor Family AT3G06380 52.9 3.9e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53863 PF01167 Tub 8.20E-96 CL0395 Cre TF