Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1299 ATGTCTCTCAAGAGCATCTTCCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGGACGCTCTGGACCAAAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCCGGGAGGTTTTGATCAGAATCGAGGCGTCCGAGACCTTTTGGCCGCCTAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACCAGTGCACTAAGTGATGACGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCGGGAGCCAAGATCACTAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCGAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAATTAAATGTGTTGGGATCAAGGGGTCCAAGGAGAATGCAATGTATCATGGACGCTATTCCCGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCAACGCCGACCGAACTTTCTTTGAGCAATGTGGAATTGTTTCCATCATTCCCATTCCTAAGGTCAAAATCCAATGCCGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCATGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCGGAAAATGATACACCTACACCAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCACACATCGTTTAACAGGGAATGGACGCTCAATTTGAAGGTCTACTGA 1134 47.09 MSLKSIFQDMRSRSRCVVQDASAPEPRDALDQSCWANMPQELLREVLIRIEASETFWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDTPTPEHEKIILQFGKVGKDLFTMDYHTSFNREWTLNLKVY 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6911502 6914610 - CrPI670011_06g012990.1 Cre06g1299 500761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1299 377 CDD F-box_AtTLP-like 35 79 - -
Cre06g1299 377 SUPERFAMILY Tubby C-terminal domain-like 84 364 IPR025659 -
Cre06g1299 377 Pfam Tub family 97 363 IPR000007 -
Cre06g1299 377 Gene3D Tubby Protein; Chain A 95 368 IPR025659 -
Cre06g1299 377 PANTHER TUBBY-RELATED 22 366 - -
Cre06g1299 377 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
Cre06g1299 377 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Cre06g1299 377 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Cre06g1299 377 PRINTS Tubby superfamily signature 316 332 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1299 Cre-Chr6:6911502 Cre08g0325 Cre-Chr8:10012404 2.10E-109 dispersed
Cre05g0707 Cre-Chr5:6252309 Cre06g1299 Cre-Chr6:6911502 3.90E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53863 PF01167 Tub 8.20E-96 CL0395 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1299 K19600 - csv:101203437 702.205