Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre06g1300 | ATGCCATCCTTCTCAAAACTGTATAATACAAACCCAGCCATCGTACTAGATAATCTCACCCCTCCATCTCATCACGATCATCCCACTCTCCCACAACCAACGAATCGGTTTCTGCGATTAAGTTTCTGTTCGCCATTGAAGACTCGAGGTATTGATTTTTCTCGAAGGATTAAATGCGAGGTCGGAATTGAAGTTGAACTGAAAAGCAGGATTTCGAGTGGATATATGGCGCCTGAAATGATGGTCGAATCGGGCTTGTCGATAGTGGATTTTGGGATGGAGTTGGTGGCAGATCATACTTCGGTAGTTTCTTTAAACTTATTTGTAGCTCTTCTTTGCGGTTGCATTGTTATTGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTATAGCCCTTGTCATTGGCTTGTGTACCGGCATCATAATACTGCTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTGTTTAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCTATCATTTTCAACGCCGGGTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGCGCTTTTGGCACTCTCATATCGTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCTATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCCTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATACAAAACTTTGACCTTTCTCATATGAATTCAAGCATCGTTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACTGTGCTGGGAATTTTAGTCGGCCTCCTGAGTGCATACATAATTAAAAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTAATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATCTAAGTGCAATTCTCACTGTATTCTTTTGCGGCATTGTTATGTCTCACTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACCCTTTCTTTTGTTGCCGAGATCTTCATCTTTCTTTACGTTGGCATGGATGCGCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCTGGAAAATCAATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTATCATCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAGAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCCATGGCACTTGCATATAATCAGTTCACTAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCCCTAATAGGAATTTTGCTACCCCAACCAAAATACACAATGAGCATGCTCTCTTCCGAACCCTCTTCCCCAAAATCATTCACGGTCCCACTCCTCGGTAATGACCAAAATACCCCTTCCCCTCTTGGCCTGTTTCTGAGAATCCCATCCCATACAGTTCACCATTACTGGCGAAGATTTGATGACGCCTTTATGCGCCCTGTGTTTGGAGGACGGGGCTTTGTGCCCTTCATCCCAGGCTCCCCTACGGAAGACCCAACACAACAATGGCAAACTGAAGGAGTGGAAGCCATTGATGATAATAAAACCATTCTTATATAG | 1875 | 42.83 | MPSFSKLYNTNPAIVLDNLTPPSHHDHPTLPQPTNRFLRLSFCSPLKTRGIDFSRRIKCEVGIEVELKSRISSGYMAPEMMVESGLSIVDFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESIIALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTVPLLGNDQNTPSPLGLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFIPGSPTEDPTQQWQTEGVEAIDDNKTILI | 624 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6936222 | 6943406 | + | CrPI670011_06g013000.1 | Cre06g1300 | 500762 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre06g1300 | 624 | Gene3D | - | 225 | 276 | - | - | |
| Cre06g1300 | 624 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 101 | 611 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Cre06g1300 | 624 | PRINTS | Na+/H+ exchanger signature | 163 | 174 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre06g1300 | 624 | PRINTS | Na+/H+ exchanger signature | 192 | 200 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre06g1300 | 624 | PRINTS | Na+/H+ exchanger signature | 232 | 242 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre06g1300 | 624 | PRINTS | Na+/H+ exchanger signature | 177 | 191 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre06g1300 | 624 | Pfam | Sodium/hydrogen exchanger family | 109 | 520 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g0381 | Cre-Chr1:3201816 | Cre06g1300 | Cre-Chr6:6936222 | 2.60E-166 | transposed | |
| Cre01g1031 | Cre-Chr1:16993170 | Cre06g1300 | Cre-Chr6:6936222 | 2.80E-31 | transposed | |
| Cre03g1911 | Cre-Chr3:36178578 | Cre06g1300 | Cre-Chr6:6936222 | 9.30E-220 | transposed | |
| Cre06g1300 | Cre-Chr6:6936222 | Cre09g0604 | Cre-Chr9:5694866 | 1.40E-190 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre06g1300 | - | - | - | 0.0 |