Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1309 ATGAGAGCTTCAAATCATGGCTTCCCCCTCTTCTCTGTACTGGTTTTCATTACTCTTCTTGCTCTTCAGGTCGTCAATGGAGATTTGATCAATAATTTCTATATGAAAAGCTGCCCCCAAGCTGAGAGAATCGTTCAAGACGTCACCTTTCGTCTCGTCCGATCCAATCCCAGCCTCAGCGCTCAACTCCTCAGACTTCACTACCACGACTGTTTCGTTCGAGGATGTGATGGATCAATTCTTTTAGATACCGTTGGAACAAACCAATCAGAGAAGGATGCAAGGCCGAACCTATCCCTATTAGGGTTTGATGCCATTGACCAAATCAAGTCTGAGGTTGAGAAAGCTTGCAGTGGAGTCGTTTCCTGTGCTGATATTCTTGCTCTTGCTGCCCGCGATGCAGTTTCCTTTCCGTCCAAAAACCGGCCGCTCTGGCCAGTCTTAACCGGAAGAAGAGATGGAACAGTTTCACGATCATCAGAAGTTACCGGTAACATGCCGTCGCCGTTCTCCGATTTCGCCACTCTTAAGCAAATCTTCGAGAAGAAAGGCCTAACTGTGAGCGATATGGTGATTTTATCAGGTGCTCACACCATTGGAGTTGCTCATTGTGGCGCATTCTCAAGGAGGCTTTATAACTTCACAGGCAAAGGAGATGCAGATCCTTCATTAGATCCAAAATATGCAGATTTTCTCAGAACAAAATGTCCAAATCCAGCTGACTCTTCCATTACAGTTGAAATGGATCCAAAGAGTTCTCGTTCCTTTGATAGTGACTATTTCAAAATTCTCACACAAAAAAAGGGTTTGTTTCAATCCGATGCTGCACTTCTCACTGACGCTTCGTCGTCTCAGACCGTCAAACAGTTGCAGAATCCAAAGGCTTTCTTTTCTAACTTTGCTAATTCCATGCTGAAGATGGGAGCCATTGAAGTACTCACGGGACCTAATAATGGCAATTTTTTCATGGATTGTCGTCGTTGCTATGCCACCGCCACCCGCCCCAACGCCGTCAACGGCCTCCACAGTTCCAATCTACTCAACTCCAATCGGCACTTTCAGCAAGGCCATGTGTGTGTTGTTTATGAAGGGGTGGAGAAGTTTGTGACAGACATGAGAAAGCACAAGGTTGTAGTGATGGGGAAGTTTGATCCCCATAAAGTTATGAAGAAACTAAGAGAAAAGACAGGAAAAGCCGTTGAGATGGTGGTCGACAAAGGTTCAATGGTGAAAGATGCAACCGTTGCCAAGGATTCAGAGCGATCGGACCCGAATAATTCCAATCAGTTGATGATGTTAAATTGTTGCAAGGAGAGTGCTCAGTTGCTGGTTTTGTTCAGTGATGAGAATCCAAATGCTTGTTGCATTATGTAG 1374 45.05 MRASNHGFPLFSVLVFITLLALQVVNGDLINNFYMKSCPQAERIVQDVTFRLVRSNPSLSAQLLRLHYHDCFVRGCDGSILLDTVGTNQSEKDARPNLSLLGFDAIDQIKSEVEKACSGVVSCADILALAARDAVSFPSKNRPLWPVLTGRRDGTVSRSSEVTGNMPSPFSDFATLKQIFEKKGLTVSDMVILSGAHTIGVAHCGAFSRRLYNFTGKGDADPSLDPKYADFLRTKCPNPADSSITVEMDPKSSRSFDSDYFKILTQKKGLFQSDAALLTDASSSQTVKQLQNPKAFFSNFANSMLKMGAIEVLTGPNNGNFFMDCRRCYATATRPNAVNGLHSSNLLNSNRHFQQGHVCVVYEGVEKFVTDMRKHKVVVMGKFDPHKVMKKLREKTGKAVEMVVDKGSMVKDATVAKDSERSDPNNSNQLMMLNCCKESAQLLVLFSDENPNACCIM 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7047846 7053450 + CrPI670011_06g013090.1 Cre06g1309 500771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1309 457 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 Pfam Peroxidase 46 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 FunFam Peroxidase 32 179 - -
Cre06g1309 457 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cre06g1309 457 FunFam Peroxidase 167 307 - -
Cre06g1309 457 Gene3D Peroxidase, domain 2 167 307 - -
Cre06g1309 457 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 Gene3D - 326 406 - -
Cre06g1309 457 ProSiteProfiles Plant heme peroxidase family profile. 28 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 Gene3D - 32 325 - -
Cre06g1309 457 PANTHER PEROXIDASE 25-RELATED 30 317 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cre06g1309 457 SUPERFAMILY Heme-dependent peroxidases 29 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1309 457 CDD secretory_peroxidase 32 327 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0512 Cre-Chr2:2214288 Cre06g1309 Cre-Chr6:7047846 1.00E-80 dispersed
Cre02g1179 Cre-Chr2:11047108 Cre06g1309 Cre-Chr6:7047846 7.20E-82 dispersed
Cre06g1309 Cre-Chr6:7047846 Cre06g1975 Cre-Chr6:27112757 3.90E-65 dispersed
Cre06g1308 Cre-Chr6:7030558 Cre06g1309 Cre-Chr6:7047846 1.30E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1309 K00430 - csv:101215642 527.709