Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1310 ATGGCGCTGTGTACGCTAACTTTTCCTGCTCATGTTAGCCGAGTTGCAGTGAAAGAGCACGATGGTTCAAGTGCTGTTTCTTCTCGGTTCTTATGGGGAACGGATCTGGTGTTCCGATTTCAGAAAAGGGTCAATCAGGTCAAGAAAAGGCCAGGTGGGATCTGTGCATCACTTTCAGAGATGGGGGAGTATCCTTCACAAAGGCCACCAACTCCTCTTTTGGACACAATAAACTATCCAATTCATATGAAAAATCTATCCATCAAGGAGCTTTATCAACTAGCTGATGAAGTAAGATCGGATGTCATCTTCAACGTTTCTAAAACTGGTGGTCACTTGGGTTCCAGCCTTGGCGTGGTGGAGCTCACGGTGGCTCTTCACTATGTCTTCAATGCCCCACAGGACAGAATTCTGTGGGATGTTGGGCATCAGTCTTATCCACACAAAATTCTAACCGGAAGGAGGGATAAGATGTCTACTATTAGACAGACAAACGGGTTGTCGGGATTCACGAAACGCTCCGAGAGTGAGTTTGATAGCTTTGGCGCGGGGCATAGCTCTACCACCATCTCCGCAGGCTTAGGAATGGCTGTGGGAAGGGATCTTAAGGGAAGAAAGAATAATGTGGTTGCAGTTATAGGTGATGGTGCCATGACTGCAGGGCAAGCTTATGAAGCCATGAACAATGCCGGGTACCTCGACTCAGACATGATCGTTATTCTTAATGACAACAAACAAGTCTCTTTACCAACTGCAACTCTCGATGGGCCCGTACCGCCTGTGGGAGCTTTGAGCAGTGCTCTCAGCAGGCTGCAGTCCAACAGGCCTCTCAGAGAATTGAGAGAGGTAGCCAAGGGCGTCACAAAACAACTAGGTGGTCCTATGCATGAGTTGGCTGCAAAAGTTGATGAATATGCTCGTGGGATGATTAGTGGTTCTGGATCAACGTTATTTGAAGAGCTGGGGCTCTATTATATCGGCCCTGTTGATGGTCATAACGTGGATGATCTTGTCTCCATTCTTAAGGAAGTTAAGAGTACAAAAACCACTGGTCCAGTCCTCATCCATGTTGTCACTGAGAAAGGACGAGGCTATCCATATGCTGAAAAAGCTGCTGACAAGTACCATGGAGTCACAAAGTTTGATCCTGCTACTGGAAAACAACAGAAATCCAAGGCTCCAACGCAGTCGTATACCACATACTTTGCAGAGGCATTGATTGCAGAAGCTGAAAAAGACAAAGATATTATTGCGATCCATGCTGCAATGGGAGGAGGCACAGGCTTAAATCTCTTTCAAAGACGTTTTCCGACAAGATGCTTTGATGTTGGCATAGCTGAACAGCATGCTGTTACATTTGCTGCTGGTCTGGCTTGTGAAGGCCTTAAACCATTTTGTGCGATCTATTCGTCGTTCATGCAAAGGGCATATGACCAGGTAGTTCATGATGTTGATCTGCAAAAGTTGCCCGTGCGATTTGCAATGGATAGAGCAGGCTTGGTTGGAGCAGATGGCCCAACTCACTGTGGCGCTTTCGATGTTACTTTTATGGCATGCCTGCCTAATATGGTGGTCATGGCTCCGTCTGATGAGGCTGAACTCTTTAACATGGTTGCTACAGCTGCAGCCATAGATGACCGACCCAGTTGCTTCCGGTATCCACGAGGTAATGGTATCGGTGTAGAGCTGCCACCAGGGAATAAAGGCATTCCTATTGAGGTTGGGAAAGGGAGGATTTTACTTGAAGGGGAAAGAGTTGCCCTGTTGGGCTATGGAACGGCAGTTCAAAACTGTTTGGCTGCTGCATCTATGGTTGAACGCCATGGCTTACGAATAACAGTTGCAGATGGACGTTTCTGCAAGCCACTCGACCGAGCCCTCATCCGAAGTCTAGCTAAATCACATGAGATTTTAATCACAGTGGAAGAAGGATCGATTGGGGGATTTGGGTCTCATGTCATCCAGTTTCTGGCTCTTGATGGCCTTCTTGACGGCACCTTGAAGTGGAGACCGCTTGTCCTTCCCGACCGATACATCGACCATGGATCGCCAGCAGACCAACTGGCTGAAGCAGGTCTTACTCCATCTCATATTGCTGCTACAGTATTTAATATGCTAGGACAAACCAGGGAAGCTCTTGAGATTATGTCATAG 2154 47.31 MALCTLTFPAHVSRVAVKEHDGSSAVSSRFLWGTDLVFRFQKRVNQVKKRPGGICASLSEMGEYPSQRPPTPLLDTINYPIHMKNLSIKELYQLADEVRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRRDKMSTIRQTNGLSGFTKRSESEFDSFGAGHSSTTISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQLGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVSILKEVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVTKFDPATGKQQKSKAPTQSYTTYFAEALIAEAEKDKDIIAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFNMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPIEVGKGRILLEGERVALLGYGTAVQNCLAAASMVERHGLRITVADGRFCKPLDRALIRSLAKSHEILITVEEGSIGGFGSHVIQFLALDGLLDGTLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNMLGQTREALEIMS 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7053935 7057779 - CrPI670011_06g013100.1 Cre06g1310 500772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1310 717 Gene3D - 395 565 - -
Cre06g1310 717 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 394 584 IPR029061 -
Cre06g1310 717 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 575 707 - -
Cre06g1310 717 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 54 713 IPR005477 GO:0008661(InterPro)|GO:0009507(PANTHER)|GO:0015995(PANTHER)|GO:0016114(InterPro)|GO:0016744(PANTHER)
Cre06g1310 717 CDD TPP_DXS 110 365 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Cre06g1310 717 Gene3D - 575 707 IPR009014 GO:0003824(InterPro)
Cre06g1310 717 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 359 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Cre06g1310 717 SUPERFAMILY TK C-terminal domain-like 570 706 IPR009014 GO:0003824(InterPro)
Cre06g1310 717 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 76 706 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Cre06g1310 717 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 395 563 - -
Cre06g1310 717 CDD TPP_PYR_DXS_TK_like 402 555 - -
Cre06g1310 717 ProSitePatterns Transketolase signature 1. 99 118 IPR049557 -
Cre06g1310 717 Pfam Transketolase, C-terminal domain 575 698 IPR033248 -
Cre06g1310 717 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 707 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Cre06g1310 717 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 458 IPR029061 -
Cre06g1310 717 ProSitePatterns Transketolase signature 2. 502 518 IPR020826 -
Cre06g1310 717 Pfam Transketolase, pyrimidine binding domain 397 557 IPR005475 -
Cre06g1310 717 SMART Transket_pyr_3 396 561 IPR005475 -
Cre06g1310 717 Gene3D - 67 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1310 K01662 - - csv:101214927 1409.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1310 Cre-Chr6:7053935 Cre10g0925 Cre-Chr10:11290590 3.40E-294 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121