Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1319 ATGGGTTGTATCCATACAAAATGTTGCTGTCGCTACCCAAAATCGTTGGTTGGAGAATCCCAAGACTTTCGACAAGAGGTTCCTTACTGTCTTCAAGATAAGAACACTGTGATAGAGAAATCATTGGAGTTGATTCCTGTTGCTTCGCACAACTATCATTTGGAATACTTGGTACTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAACCAAGACAGTTTCTGCATTAGAACAAATATTCAAGGTAACCCAAATGCCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAGACTAATAGAAAAGCTATGTAATGATCCCACATTGTTAGATGATCCAGTACAAGCTTATAATTCAGCATTTTTGTCTACAAATGATGAGTTACATACAAGTGAGATTGATGATTCCATGAGTGGAACAACTGCCATTACAGTTCTTGTTGTTGGGGATACCCTTTATGTGGCTAATGTTGGGGATTCAAGAGCTGTAATTGCAGTTAAAGAAGGGGATAGTGTTCTTGCTAAGGACTTGTCTAATGATCAAACACCATTTAGAAAAGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTCTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAATCCTGGGGCGATGAAGAAAGTCAGGGCGGCGATCCGCCTCGACTGTGGGTTCAAAATGGATTGTATCCTGGAACTGCGTTTACTAGGAGCATTGGTGATAGTACTGCAGAGAAGATTGGTGTAAATGCTGTTCCTGAGGTTTTAGTTCTTCAGCTTAACCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCAAGTCAAACTGTTGTTGATATGGCATCGAGTTATGCAGATCCTCAAGATGCATGCACTGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGGACCGATGATATAACGATCATTGTTGTTCAAATCAAAGGCTTGTCTAATTCAGGTGCTGAGAATCCGTCCAGCACTGGGCTTGAGACTGCTTCTTTGAGAATCGATTTCTCGGATCTACCTACTGAACCGAACTCTCAACATGTTGATGTGACAAATCGGAACCCAGCAATCGTGGTTCCAGCACTGAATAATCAGACACCTATATAA 1209 41.27 MGCIHTKCCCRYPKSLVGESQDFRQEVPYCLQDKNTVIEKSLELIPVASHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTNIQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPVQAYNSAFLSTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGDSVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQSWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIVVQIKGLSNSGAENPSSTGLETASLRIDFSDLPTEPNSQHVDVTNRNPAIVVPALNNQTPI 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7144544 7146797 - CrPI670011_06g013190.1 Cre06g1319 500781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1319 402 Gene3D - 49 347 IPR036457 -
Cre06g1319 402 SMART PP2C_4 56 343 IPR001932 -
Cre06g1319 402 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Cre06g1319 402 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Cre06g1319 402 Pfam Protein phosphatase 2C 72 323 IPR001932 -
Cre06g1319 402 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169(InterPro)
Cre06g1319 402 PANTHER PROTEIN PHOSPHATASE 60 344 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre06g1319 402 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Cre06g1319 402 CDD PP2Cc 71 345 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1319 Cre-Chr6:7144544 Cre11g1393 Cre-Chr11:17786343 9.00E-26 dispersed
Cre05g0683 Cre-Chr5:6004867 Cre06g1319 Cre-Chr6:7144544 1.10E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1319 - - - 0.0