Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1366 ATGGCCATTTCAGTTCGAGTAATATTTCTTCTCCTCCTTTGCTCTTTCATCCCTTCCATAGTTTCTTATCACCCTTTAGACCCTCTTTCACCAAATGAAATACAGGCAGCTGCGGCCATTATCAAAGCTTCCAAGCTCGGCCAATCGTCCAGGCTCACGTTCCACTACGTCGGCTTAGACGAGCCGAGCAAACCCGCCGTCCTTGCATGGCTATCAAACCCTTACAAACATCAACCGCTGCCTCGTCGGGCTTTCGCCATAGTCAGAGCCAACGGCCAAAGTCATGAACTCGTCGTTGACTTCAACACCAATCTTACCATCTCCTACAAAATCTACATAGGCACAGGTTATCCAATGCTAAATTTAGAGGAGCAAGAAACAGCGATCGAACTTGCAGTTAAATACCCAGCTGCAGTCGCATCGATAAAGAAGAGGGGGCTAAAAATTTCAGAGGTGGTGGCTTCAACTTTCACCATAGGATGGTATGGGGAAGAGAAGACGAAGAGAGTGATTAAAGTATTGTATTTTTACAAAGAAGGGTCTCCCAATATTTGGGTGAGGCCCATTGAAGGAATTGAAGCTCTTGTGGATCTCGATATATTGAAGGTTGTTGAGTATAGAGATCGCCATATTTTTCCTGTTCCTAAAGCTCAGGCCACTGATTACAGAGCCTCTATGGTTAAGCCGCCGTACGCGGCGGAGACGAAACCCATCACTCTTTACCAACCGGATGGCCCTACCTTCAACGTTATTGGCCATGAAATAAGGTGGGCAAACTGGGAATTTCACATGAGCTTCGACATTCGAGTAGGAATTATAATATCATCGGCATCGATCGCCGACATTGACCAACGTCGGCGACGACAAGTGCTATATAAAGCCCAAATCTCAGAGCTCTTTGTCCCTTACCAAGACCCAACCGAGGAATGGTTTTACCGGACATTTTTCGACGCCGGCGAGTTTGGATTGGGCCTTTCTGCCGTCGAGCTCGAACCCTTCACTGATTGCCCTGCAAACGCCGTGTTTTTCGATGGCTTCTACGCCGGACAAGATGGACTTCCCGTCAAAATTCCTAATGTTGTTTGCGTCTTCGAGAAGTACGCTGGCGGCGTTGCTTGGCGTCACACTGAACTCGAAATTCCTGGTGAAGACATTAGAGAAGTGCGACGAGATGTGAGCTTCGTGATAAGGATGGTTTCTATGGTGGGAAACTATGACTATATCTTTGATTGGGAGTTCAAGACAAGTGGTTCTATCAAATTTAAGGTAGGGTTAACAGGCATTCTAGAAGGGAAGTCCACAATGTACACTCACACAAAGGATATCAAAGAAGACATATTTGGCACTTTAGTAGCACCAAACACAGTGGCTGTAAACCATGACCATTTCCTCACTTATTATTTAGATCTCGACATCGACGGTCAACAAAACTCCTTCCTCAAAGCCAAATTAAAGAAGAAGAACAACCACCACGATACGCCGAGGAAGAGCTACTGGACCGTCGTGAAGGAGACGGCCAAAACAGAACTCGACGCCAGACTCCGGCTAATGGAGCCGGCTGAGTATTTGATTGTCAATCAAAATAAAGAGACTGAGGTTGGTAACCAAGTTGGGTACCGGCTGATTCCCGGGCCTGATGCTCCGCCACTGCTGGCGGCGGATGATTACCCGCAGATCCGAGGAGCCTTGTCTGATTATAATATCTGGGTTACTCCTTATAATAGATCTGAGATTTGGGCTGGTGGACTTTATTCTGATCGGAGCCGAGGTGATGACACTCTAGAAGTTTGGACGGATAGGAATAGGGATATCTACAACAAGGACATAGTTTTATGGCACACCATTGGATTTCATCATAACCCTGTTCAAGAGGAATTTCCAATAATGCCCACACTTACCGGTGGCTTCGAACTCCGGCCGGCAAATTTCTTCGACCGGAATCCCATATTGCTCATGAGGGCTCCGGAGGCTGTCAAGGTTCCGCCGCCGTGCAACGCCACCGTTCCCTAA 2010 47.26 MAISVRVIFLLLLCSFIPSIVSYHPLDPLSPNEIQAAAAIIKASKLGQSSRLTFHYVGLDEPSKPAVLAWLSNPYKHQPLPRRAFAIVRANGQSHELVVDFNTNLTISYKIYIGTGYPMLNLEEQETAIELAVKYPAAVASIKKRGLKISEVVASTFTIGWYGEEKTKRVIKVLYFYKEGSPNIWVRPIEGIEALVDLDILKVVEYRDRHIFPVPKAQATDYRASMVKPPYAAETKPITLYQPDGPTFNVIGHEIRWANWEFHMSFDIRVGIIISSASIADIDQRRRRQVLYKAQISELFVPYQDPTEEWFYRTFFDAGEFGLGLSAVELEPFTDCPANAVFFDGFYAGQDGLPVKIPNVVCVFEKYAGGVAWRHTELEIPGEDIREVRRDVSFVIRMVSMVGNYDYIFDWEFKTSGSIKFKVGLTGILEGKSTMYTHTKDIKEDIFGTLVAPNTVAVNHDHFLTYYLDLDIDGQQNSFLKAKLKKKNNHHDTPRKSYWTVVKETAKTELDARLRLMEPAEYLIVNQNKETEVGNQVGYRLIPGPDAPPLLAADDYPQIRGALSDYNIWVTPYNRSEIWAGGLYSDRSRGDDTLEVWTDRNRDIYNKDIVLWHTIGFHHNPVQEEFPIMPTLTGGFELRPANFFDRNPILLMRAPEAVKVPPPCNATVP 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7839191 7846986 + CrPI670011_06g013660.1 Cre06g1366 500828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1366 669 PANTHER COPPER AMINE OXIDASE 22 655 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
Cre06g1366 669 Pfam Copper amine oxidase, enzyme domain 239 649 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cre06g1366 669 Pfam Copper amine oxidase, N3 domain 118 214 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cre06g1366 669 FunFam Amine oxidase 248 661 - -
Cre06g1366 669 Gene3D - 23 118 - -
Cre06g1366 669 Pfam Copper amine oxidase, N2 domain 24 105 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cre06g1366 669 Gene3D Copper amine oxidase, catalytic domain 230 660 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cre06g1366 669 FunFam Amine oxidase 22 118 - -
Cre06g1366 669 SUPERFAMILY Amine oxidase N-terminal region 116 223 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cre06g1366 669 Gene3D - 119 212 - -
Cre06g1366 669 SUPERFAMILY Amine oxidase N-terminal region 23 112 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cre06g1366 669 SUPERFAMILY Amine oxidase catalytic domain 227 650 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1366 K00276 - - csv:101222468 844.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1364 Cre-Chr6:7812572 Cre06g1366 Cre-Chr6:7839191 3.80E-255 dispersed
Cre06g1366 Cre-Chr6:7839191 Cre09g2157 Cre-Chr9:40582252 7.20E-169 dispersed
Cre06g1365 Cre-Chr6:7833463 Cre06g1366 Cre-Chr6:7839191 6.30E-51 tandem
Cre06g1366 Cre-Chr6:7839191 Cre06g1367 Cre-Chr6:7849692 1.20E-211 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g485 . Blo12g00327 . . . . . . . . . . . . . . . . . . . . . . Cla06g00580 Cam06g0618 Cec06g0620 Cco06g0626 Clacu06g0605 Cmu06g0598 Cre06g1366 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01714 . . Lac12g2284 Hepe03g0193 . Lcy13g0278 . . . . . . . Lsi09g01324 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97