Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1368 ATGAATGGTTCTTCAACAACAAATTCTGAACCAGACATCTCTGAATATGTTGAAGTTGATCCTACCGGAAGATATGGAAGATATAATGAAGTTCTTGGCAAAGGAGCATCGAAGACAGTTTACAGAGCTTTTGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACTCCTGAAGATCTTGAAAGGCTGTACAGAGAAATCCATTTGTTGAAGACACTAAAACACAAAAACATAATGAAATTTTATTCTTCTTGGGTTGACACTGCAAATAGAAACATTAACTTTGTAACAGAGATGTTCACTTCTGGGACTCTCAGACAATATAGGCTGAAGCATAAGAGAGTGAATATCAGAGCTGTGAAGCATTGGTGTAGACAGATTTTAAAAGGGCTTCTCTATCTTCACAGCCATGACCCTCCTGTGATCCACAGAGACCTTAAATGTGATAATATTTTTGTAAATGGGAATCAAGGGGAAGTCAAAATTGGTGATCTTGGCCTTGCTGCTATTCTTCGTAAATCCTATGTAGCTCGATGTGTTGGAACACCAGAGTTTATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATATATTCTTTTGGAATGTGTATTTTAGAGATGGTCACTTTTGAATATCCATACAGTGAATGCACTCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTCTGTATAAGGTAAAGGATCTCGAGGTTCGATGTTTCGTCGAGAAATGTTTGGCTACTGTGTCAACTAGGCTGTCTGCTAGGGAGCTTTTGAATGACCCTTTTCTTCAAATTGATGGTTGTGATTCTTTACTGAGGCCAATAGAGTACTATTCAGAATATGATGAAGTGAACAATTCCCTTATCAGAGGAGGGCCTTTTTATGGAATTCCTCATGGTTCTTTGGATAATGGGTATGTGAATTATTTTGGTCATGAGGCTGGGAATGGTTTGGATTACTGTCCGATTGATAACGAAGCGAATGAAATCGATCTTTTCTCCTGTCAAGAGGATGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGTGACGATGATATCTTTCTTCGACTTCGGATTGCAGATAAAGAAGGTCGAATTCGAAACATCTACTTTCCCTTCGATTTAGAGAATGATAGTGCTTTGAGTGTTGCAAATGAGATGGTTTCTGAGCTTGACATTACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGGTGAAATTGCTACATTGGTGCCAGAGTGGAAGAGGGGAAAAAGTTCAGAGGAAACTCCAAATTGCACTGATTCTAATGTTTGTCACAATTGTGCTTTAAACAATTCTCTTTTGGATTATGTATCGCCGAATAATCCCGCGACGAAGAACTTGCACATTCTTCAGTGTTCTCAAGAGCATGGATGTGCTTCTATCCATGGACGTTTTGAAGAGATTACATACCAAGTTGAGGGGTCAGAACAATTCAATGGAGACGAAAACTTGCACAGAACAACGGAGAATTCAAACGATATCCATTACACCGATATTTGGGCGCAACGAGATGGACCAGATGCAGTTTCTCAAGAATCTTTAGAAACTTGCAATGAATCTGGAACATTGGAACAGCCGAAACTCGAGAAGGAAGAAAGTAATGTAAATATGGACAATGATCATCAAATGGAATTCCAAACAAGAAACTCTAGCTCATCAAATCCTTCACTGTCCTTTGTCAACGATCACGAGAACGAAATTCGACAAGAACTAAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGCTAAGGGATCAACAGTTAGGAGTCAAGACCAAATCTCTTAGCTTGCATCCGAATCCCAACCTTGTGGAGACCGACAATGGAGCTTCGGTATCTTTGCTTTCCCCAAACTTCAATGAAGCAGCAAAAAGTAAGCCTTCCCTAACATCTCTCTCCGTTAGCAAGAATATCACTTCACATTCCTTCTATGCTGCTGTTGATAACATTATGGAAAACCAAACCTTCCAAGACGACAAAGTCGTTGTCGACGAGCCGAGTAGTCCCGAGCTGATGGTTGCTGCCAAGAGTTTCTATAGAGGAGCATTGTTTCCAAATTCTCTTCAAAGAGCAACCTCACTTCCTGTTGATGCTATAGACTTTTAG 2217 39.78 MNGSSTTNSEPDISEYVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFYSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDLEVRCFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLRPIEYYSEYDEVNNSLIRGGPFYGIPHGSLDNGYVNYFGHEAGNGLDYCPIDNEANEIDLFSCQEDEHLADVDITIKGRRRGDDDIFLRLRIADKEGRIRNIYFPFDLENDSALSVANEMVSELDITDQDVKKIADMIDGEIATLVPEWKRGKSSEETPNCTDSNVCHNCALNNSLLDYVSPNNPATKNLHILQCSQEHGCASIHGRFEEITYQVEGSEQFNGDENLHRTTENSNDIHYTDIWAQRDGPDAVSQESLETCNESGTLEQPKLEKEESNVNMDNDHQMEFQTRNSSSSNPSLSFVNDHENEIRQELRWLKAKYQMQLRELRDQQLGVKTKSLSLHPNPNLVETDNGASVSLLSPNFNEAAKSKPSLTSLSVSKNITSHSFYAAVDNIMENQTFQDDKVVVDEPSSPELMVAAKSFYRGALFPNSLQRATSLPVDAIDF 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7881587 7884416 + CrPI670011_06g013680.1 Cre06g1368 500830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1368 738 SMART serkin_6 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1368 738 CDD STKc_WNK 24 283 - -
Cre06g1368 738 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 623 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cre06g1368 738 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Cre06g1368 738 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Cre06g1368 738 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1368 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1368 738 ProSiteProfiles Protein kinase domain profile. 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1368 738 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 379 434 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cre06g1368 738 FunFam probable serine/threonine-protein kinase WNK9 109 288 - -
Cre06g1368 738 SUPERFAMILY Protein kinase-like (PK-like) 29 284 IPR011009 -
Cre06g1368 738 Coils Coil 603 623 - -
Cre06g1368 738 Gene3D - 377 465 - -
Cre06g1368 738 Gene3D Phosphorylase Kinase; domain 1 11 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2214 Cre-Chr2:35826417 Cre06g1368 Cre-Chr6:7881587 4.20E-134 dispersed
Cre04g0742 Cre-Chr4:25670752 Cre06g1368 Cre-Chr6:7881587 2.30E-118 dispersed
Cre06g1368 Cre-Chr6:7881587 Cre06g1728 Cre-Chr6:15233650 1.10E-183 dispersed
Cre03g0610 Cre-Chr3:5021396 Cre06g1368 Cre-Chr6:7881587 1.30E-141 transposed
Cre02g1958 Cre-Chr2:32971515 Cre06g1368 Cre-Chr6:7881587 8.30E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64206 PF00069 Pkinase 5.60E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1368 K08867 - csv:101210511 1369.76