Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1369 ATGGAGGACGGTGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCTGGTTGCTTAATTGTTAGAAAAAAAGAGGATGGATTAGGAGGCGCCGGTTCTTCGGGCTCACGCTTGCTTAATGCAAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGTTGCCTCATCGTAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTGTGGATGAGAGTGGAAGTATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGGTTTAATCAACAGGATGGATGTGGATGGTTTACGAAGAAATATGGACACCTTAGATGTCTTTGAGTTCAACGAATATGATGAAATTGATGGCGAGACTTTTCGGAGGAAGCATTTTAATGACAGTGGAGAAAGACGGTTTGTTGGTTCCATGAAACTGCCTCAAATGGGGGTTGAGAGGGAATTTGGAACCACTTCTAGCAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCTGAACAAACCAATAGCTTTGATCGGGACAGGCCTCCCAGAAAGATTAATTATGACTCAGATAATGACGGACCTCAACTCCCAACACCCTTGTTGAGAGATAAGTTTAGGGGTCATTCCGATGAAGCAATCAGGGTTCAGGGAAAAAATGGAGTTTTAAAGGTCATGGTAAACAAGAAGAAAAATGTGAGTGGTGCTTCCGATATGTATGATCATCGCAAATTAGAAGAAAGTAGAAAGAGTCTAAGGACTGAAGATACTCTGAAGAGGAAAGTGTTAGTTTCTTCTTCACTTCACCCAGAAACTAAGCCCAATGTGAAAGAGGATCTCTTTTCTAAGCCAGAGAAAGACCATACAGATTTTCAAACTTCAGCATCAACAAAAAATGTAAAGGGTTGCAGTTGGGATTCAGGGGACAGTAGTGTGTCATTGAAGCCCAGAAAAAAGGTTGTTGAAGCTCACAAATCCACCAAGAAGGCAAGTTGTGAAGTTGATAAAATTCCATGTGAAGAAACTCCCCCAAGTACAGCAAAGGAAGGAAAAGTAAAAAGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCTGGCTGGAAAATTGATTACAGACCCAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCCACTGGAACAGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTAAACGAAGAAGGAGCAGAGGCTAAACCTAGTGCTGATGGTTCATTTACACCAATATCAGATGATATTCTTAGTCAATTAACCAGGAAAACTAGAAAGAAAATTGAGAAAGAATGGAAAAATAAGCGGAGAGATGATAGTGACAGTGAAAATGCTAAAGAAGCAAGCGCACTAAGATCTGCTGGTACCAAAAATGACATGGACAGCATGGACAGTGACAGCAACGAAGAAAAGTTAAGTTCTTTCATAAAGCAGGGTGGAAAATCTTTTAAAAATAAATTGACCGAGAATGGTTTTCCCAGTGTCAACTCCAAAGGTCAAAGTTCTAGTAAGTATTCGCGTGATACCATTGTAAAATCTTCTTCTGGATCCAATTCACATATTTTACATGGAAGAAGAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAGTAGGGGATTAGATTCAGAGAATGATGGATATGTTCCATATACTGGTAAAAGGACTCTGCTTTCCTGGCTTATCGATTCTGGAACGGTGCAGTTGAGCCAAAAGGTCCGGTACATGAACCGCAGACAGACCCGGGTGATGCTGGAGGGGTGGATTACCAGAGATGGCATCCATTGCGGTTGCTGTAGCAAAATCCTAACTGTCTCCAAGTTTGAGATACATGCTGGAAGCAAATTACGCCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCTCTTCTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGAGTCGAAACGCCTCAGTTTCCACACGGTTGAAATTGACGGTGATGATCCGAATGATGACACATGTGGCATCTGCGGAGATGGTGGAGACTTGATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGATATTCAGATTCCTCCAGGTGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCAGTGTTGATATTTCTCAGGGAGACAATACCATTGTTCCTGAGATATCTACTTGCATGTTATGCGAGAAAAAATTTCATGAGTCCTGCAATCTTGAGATGGATACTCCTGTTCATTCCAATGCTTCAGTCACTTCTTTTTGTGGCAAGAATTGTAGAGAGCTTTTTGAGAGTTTGCAGAAGCATCTTGGGGTGAAACATGAATTAGATGCAGGATTCTCGTGGTCTCTTATCCGTAGAACAAGTGAAGATTCGGATGTATCTGTTCGTGGACTTTCTCAAAGGATCGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGGAGGAGCGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTATAGGCTAAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACTAAGTTAGCTGAAATGCCATTCATTGGTACACGCCATATTTATAGACGTCAAGGAATGTGCCGTCGGCTTTTTTGCGCAATTGAATCTGCTCTCCGCGTGCTTAAGGTTGAGAAACTGATTATACCCGCAATCGCTGAGCTCATGCACACTTGGAGTGTGATTTTTGGCTTTAGTCCTCTGGAGCAATCACTCAAGCAAGAAATGAGACTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGCTGTTAATCCAAGAGACATTTGTCGAGGAGAATACTTCTACTGGCTCAGGTGCAAAGCAAACGGATTATAGAAGTACAGAGTTAAGTAGTCCTAAGATGGATACAGAGACCTCATCTGGCCATGAACCTCAAAGTTGTGATGACACTGAACAGCATCACTCCAAAGAGAAAAGAAATGAAGCAGCTGTCACTAAACCAAATCTTGAATCCGTGTCTGTTTCTCTAAATGATACTTCTGCGGCAAATAGTCCTCTGGATGCATTTTGTGAAGTTAAAAGGTCATGTTCTCCAATGCAAACTGTAAATTCGGATTGGGATTCTGGTGATAAAGTTAAATGTTCGTCTCGATCTGATTCACCCGACTCTCTTCAACGCAACATTAAGCCAGGAACTCAGCATGATATAGAGGACCATGTGCAGGTCACTTCCCAATGTATGGAAGCTGATACATCTTCAGACGGATTTCTTGAACCTAAGGTTAAAGTTTCAGATGAAGGAATCATTTGTTCCAATTCTCATGCTGGGCATGAGTTGGCTGACTCCGGTTCTGAGAAGAAATCTTTTCCTCCTGCAATCGGCAATGGCACCGATGAGTTTGTAAATGACATTCGCGTAGTGGATTCTCCTGAAGATGATAAGTCATTCAATAAGATTAATGGTCATGAATTTTGTGAAGACGATGTCCATGCTAATGCTCTTAAACCTGCTCAGTCGGTTGAGAATCCACTTGTCTCTAATGCTAGTTTATGTGGCACTAATGGACACCCCTACGAAACTACATCTGATTGCAAAAATGCAAGACCTTATGGGAAAGAAACTGTTTCTGATGGAATTTGTGACAGTGAAAATTCTCCACAGTCATGTGGGGCAAAAACCAGAGGTGATTCACAGGAAGAGAAAGCTGAATCTGTTAACAGAGGTGCCCTTGATGGAAGTAGGCATGGTTCAATTCACCCTTTCTCTTCTGAAATTGCTGCTTTCGAACATGAACACATTTATTATGCTGGGTGGTTTGGAAGCTCAGACTTCACGGTATGGTCGAACCTGGTTCGGGATCTCTCCAAACCAGCATATTTTCTAGAAATGGAGCATTCCCATTCTTGGTCAGGGTCAGCTAATCTCTTGGAGCAAAATCTTCTTGTAGTTGTAATGATTGATCACACATGGTTCCAGCGCCGATTTGGCTCGATCTTTGACAGAACTATATTGACATTCAAGAATGGTATAACCACCCTATTGTATAGGCTGTTTTGGTGGAATCTGGGAGCTTGTCAACTCAAAGGAAACCCAGATGAGAAATTGGAAATTGTGGTTCAAGGTCGACGATTCGATTCTCTGTCGAAGACGACTCCGACGACAACTTACTGGTGGAAGAAGCCGGAAAAACCCAAGAGAGTTGTATCAAAGAAGAAGAAATGA 4431 41.95 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSGSRLLNAKKEKKRPRLVLSDSGSSDEVLLPHRRRVGPETIRVCNGLNSFGKDVVDESGSIRKKDRLQYVKRNDDGLINRMDVDGLRRNMDTLDVFEFNEYDEIDGETFRRKHFNDSGERRFVGSMKLPQMGVEREFGTTSSRHALVDKRKNLYAEQTNSFDRDRPPRKINYDSDNDGPQLPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVNKKKNVSGASDMYDHRKLEESRKSLRTEDTLKRKVLVSSSLHPETKPNVKEDLFSKPEKDHTDFQTSASTKNVKGCSWDSGDSSVSLKPRKKVVEAHKSTKKASCEVDKIPCEETPPSTAKEGKVKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSADGSFTPISDDILSQLTRKTRKKIEKEWKNKRRDDSDSENAKEASALRSAGTKNDMDSMDSDSNEEKLSSFIKQGGKSFKNKLTENGFPSVNSKGQSSSKYSRDTIVKSSSGSNSHILHGRRGRKLGLLVRGSSRGLDSENDGYVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQRDAWNRQEESKRLSFHTVEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVASVDISQGDNTIVPEISTCMLCEKKFHESCNLEMDTPVHSNASVTSFCGKNCRELFESLQKHLGVKHELDAGFSWSLIRRTSEDSDVSVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRVLKVEKLIIPAIAELMHTWSVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIQETFVEENTSTGSGAKQTDYRSTELSSPKMDTETSSGHEPQSCDDTEQHHSKEKRNEAAVTKPNLESVSVSLNDTSAANSPLDAFCEVKRSCSPMQTVNSDWDSGDKVKCSSRSDSPDSLQRNIKPGTQHDIEDHVQVTSQCMEADTSSDGFLEPKVKVSDEGIICSNSHAGHELADSGSEKKSFPPAIGNGTDEFVNDIRVVDSPEDDKSFNKINGHEFCEDDVHANALKPAQSVENPLVSNASLCGTNGHPYETTSDCKNARPYGKETVSDGICDSENSPQSCGAKTRGDSQEEKAESVNRGALDGSRHGSIHPFSSEIAAFEHEHIYYAGWFGSSDFTVWSNLVRDLSKPAYFLEMEHSHSWSGSANLLEQNLLVVVMIDHTWFQRRFGSIFDRTILTFKNGITTLLYRLFWWNLGACQLKGNPDEKLEIVVQGRRFDSLSKTTPTTTYWWKKPEKPKRVVSKKKK 1476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7888291 7898831 + CrPI670011_06g013690.1 Cre06g1369 500831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1369 1476 ProSitePatterns Zinc finger PHD-type signature. 708 746 IPR019786 -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 490 504 - -
Cre06g1369 1476 Pfam Domain of unknown function (DUF7028) 369 436 IPR054292 -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 192 220 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 1045 1067 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 1278 1316 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 368 382 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 472 489 - -
Cre06g1369 1476 Pfam Tify domain binding domain 630 680 IPR032308 -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 192 210 - -
Cre06g1369 1476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 808 IPR013083 -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 1179 1198 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 44 58 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 1297 1311 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 515 564 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 1017 1073 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 472 566 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 1103 1133 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 315 330 - -
Cre06g1369 1476 CDD PHD2_CHD_II 708 746 - -
Cre06g1369 1476 SMART PHD_3 707 747 IPR001965 -
Cre06g1369 1476 Pfam PHD-finger 708 746 IPR019787 -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 1017 1044 - -
Cre06g1369 1476 ProSiteProfiles Zinc finger PHD-type profile. 705 749 IPR019787 -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 30 61 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 1281 1296 - -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 308 330 - -
Cre06g1369 1476 SUPERFAMILY FYVE/PHD zinc finger 696 752 IPR011011 -
Cre06g1369 1476 MobiDBLite consensus disorder prediction 363 382 - -
Cre06g1369 1476 PANTHER PHD FINGER PROTEIN 12 305 1120 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1369 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1369 Cre-Chr6:7888291 Cre11g2165 Cre-Chr11:33318226 1.70E-109 dispersed
Cre02g2255 Cre-Chr2:36159602 Cre06g1369 Cre-Chr6:7888291 1.60E-85 transposed
Cre06g1369 Cre-Chr6:7888291 Cre09g0673 Cre-Chr9:6407840 3.90E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53866 PF16135 TDBD 4.60E-22 No_clan Cre TR