Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1384 ATGCTGCCATTTGAATCAGATTTAATTTTGGAAAATGGATTTGAAAACCCTTGGTTTTTGAGCTTTGATCAAAATTTCCTCTTGACAATGGGCACAGTAGGTGATAATTGGGGAGACGATTGTTCTGTCATTAAAGACAAAGGAGAGATTTCCTATATTGACTACGAAGACGATAAATCTGTTTGCAGTTATAATCCTATTGAGGAAGGTCCAGTTATTGTTTCAGTGCCATTTGCTTTTGTGAACGGCAAACCTCAATCAGTTTTCGTTGGAGAAACAGCGGTTGATGCCATTACCATCAAGAACACCACCGATGAATCAGTGGACCTATGGGCTGTTAATATTTATGCATCTAATCCTGAAAACTCGTTTACGCTCTCTCTAATGGAGCCCCCAGCTCCAAATGCTGACATAGAAAGTGTACAAGCTTTCTTGGAGTCTTTTTCGTTGGAGGATAGAATGATCCATCCGGATGAGTCTCTTACTATATGGCTGTCTTGCAAACCAAAGGAAATTGGTTTGCACACAACAGTTGTGCATTTTGATCTCGGCAATGAAAGAATAGAACGAGTGTCTTTTCTTTTAGCAGATGATAAGATTTCACAGTCGTTGGCTTCTAGGAAGCCATATTCAAGAGATAGGAGAAGGAGGCATGAGGCAGTAGATTCGTATATTCCTGGCTCACGTCCTACTAGAACGCAAGGTCGGGGATTCAAAAATTTCCTTCTCCAATATGAAATCCCTAGTAGAATTAGAGATGAACTTAGCAGAAAGGAGATCCCTAGTGCTGTTCGAGAAGGACTTAAAAGAGATACCTACATTCCCTATTTCATGACATTGTTGAACATGGAAGAAATACAATTGGAGGAAGACATGAGAGCTTATGATATGGAGCGTGTTACTATGAGAAGAAAGGGACATAACTTTTTGTCCCTCGAGGTTCCGGGGCTCGCTGAGAGAAGGCCTTCACTTGTCCATGGAGACTATATCCTTGCCAAGATGCCTTTTGGACATACAAATGACTCGGTTCCTGCTTATCAGGGGTATATTCATCACGTTGAAGCTGATGAAGTTTTCCTAAAATTTGCTCCAGAATTTCACATTAACCACAGAGATGACAATCTGTATAATGTCCAGTTTACCTACAACAGAATTAACATGAGAAGGTTCTATCAGGCTGTTGATGCGGCAGAAAGTTTAGCAAAGGAGTTTCTGTTCCCATACGAGTTTTCAGAAAGAAGATATATCAAGACTACTCCACTGGTGCCTATAACTCAAAACATCAATGAGGAACAGATGCGTTGTGTTCAGATGATCCTTGGTTGCAGAGGTGCGCCACCTTATTTAGTTCATGGACCTCCTGGTACTGGTAAGACTCAAACTTTGGTGGAAGCTATCCTCCAACTCTACACAACACAAAAGAATGCTCGGATACTTGTTTGCGCTCCTTCAAATAGTGCTGCAGACCACATACTGGAGAAGCTTCTCAGTCAGGAGAGTGTTGAAATTCGTGATAATGATGTTTTCAGGCTAAATGCAAGCACACGACAATATGAGGAAATCAAGCCTGACCACCTTCGCTACTGCTTCTTTGATGAACACATTTTCAGGTGTCCTCCACGCAATGCCCTAGTCCACTATAGGATTGTCGTTTCAACTTATATGAGTACTTCCCTTCTTTATGCTGAGGATATCAAGCGTGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCAGAATCCATAATTCCAGTATCCAACCTCTGTCTAAGGAGAACAGTTGTCGTTCTTGCTGGTGATCCCATGCAATTAGGTCCAGTGATTTACTCCAAGGAAGCAGAAATTTATGGATTGGGTAAATCATATTTGGAAAGGCTTTTTGAATGTGAATATTACAGCACTGGGGATGAAAACTATGTAATAAAGTTGTTAAGAAACTATAGATGTCATCCAGATATCTTGCATCTTCCTTCTACATTGTTCTATGGTGGGGAACTAATTGCATGTAAAGATGAGAGAAGTCTCCTCACGGATACAGCAGATATTCTTCAAGTACTTCCTAATAAAGAGTTTCCTGTTCTTTTCTTTGGTATCCAAGGTTGTGATGAGCGAGAAGGCAACAATCCATCATGGTTTAACCGAATTGAAGTAAGCAAGGTGGTTGAGATTATAAGGAAACTGACTGATGGTGGAAATCTGAGTGAGGAAAATATCGGGGTCATAACGCCGTATCGACAACAAGTGCTCAAAATAAGGAAAGCCCTTGATAGCCTGGATATGCTTGATATAAAGGTTGGTAGTGTAGAACAATTTCAAGGACAAGAGAGGCAAGTGATTATTGTTTCTACTGTTCGATCAACAATCAAACACAATGAGTTTGACAGAACCTACTGTTTGGGGTTTTTGAGTAATCCAAGAAGGTTTAATGTGGCTGTTACCCGGGCTATATCTCTTCTGGTCATAATTGGCAACCCCCATATAATCAATCAGGATATGTATTGGAACAAGCTGTTATGGCAGTGTGTTGACAAAGATTCATATCAAGGTTGTCCCCTTCCTGAAAGGCAGGACCCCACAGACGAGGAACAACCCTGCAATAACGAAGAGGGACAAAGTTCAGGATTTGAAGCAGGCCAGAATCCAGAGCAGCCGGAGCCAGCACTGGCACCGGAAACGGAATTTTCTGAACCAGTTGTTGATGAAGCTGAATGGTCTGATGGGTGGAAGTAA 2745 41.49 MLPFESDLILENGFENPWFLSFDQNFLLTMGTVGDNWGDDCSVIKDKGEISYIDYEDDKSVCSYNPIEEGPVIVSVPFAFVNGKPQSVFVGETAVDAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPAPNADIESVQAFLESFSLEDRMIHPDESLTIWLSCKPKEIGLHTTVVHFDLGNERIERVSFLLADDKISQSLASRKPYSRDRRRRHEAVDSYIPGSRPTRTQGRGFKNFLLQYEIPSRIRDELSRKEIPSAVREGLKRDTYIPYFMTLLNMEEIQLEEDMRAYDMERVTMRRKGHNFLSLEVPGLAERRPSLVHGDYILAKMPFGHTNDSVPAYQGYIHHVEADEVFLKFAPEFHINHRDDNLYNVQFTYNRINMRRFYQAVDAAESLAKEFLFPYEFSERRYIKTTPLVPITQNINEEQMRCVQMILGCRGAPPYLVHGPPGTGKTQTLVEAILQLYTTQKNARILVCAPSNSAADHILEKLLSQESVEIRDNDVFRLNASTRQYEEIKPDHLRYCFFDEHIFRCPPRNALVHYRIVVSTYMSTSLLYAEDIKRGHFSHIFLDEAGQASEPESIIPVSNLCLRRTVVVLAGDPMQLGPVIYSKEAEIYGLGKSYLERLFECEYYSTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDERSLLTDTADILQVLPNKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEIIRKLTDGGNLSEENIGVITPYRQQVLKIRKALDSLDMLDIKVGSVEQFQGQERQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRFNVAVTRAISLLVIIGNPHIINQDMYWNKLLWQCVDKDSYQGCPLPERQDPTDEEQPCNNEEGQSSGFEAGQNPEQPEPALAPETEFSEPVVDEAEWSDGWK 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8026638 8032123 - CrPI670011_06g013840.1 Cre06g1384 500846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1384 914 CDD DEXXQc_Helz-like 429 653 IPR026122 GO:0003723(InterPro)|GO:0032574(InterPro)
Cre06g1384 914 Gene3D - 346 639 IPR027417 -
Cre06g1384 914 FunFam Probable RNA helicase SDE3 653 855 - -
Cre06g1384 914 PANTHER DNA2/NAM7 HELICASE FAMILY 185 878 IPR045055 GO:0005829(PANTHER)|GO:0035194(PANTHER)|GO:0043186(PANTHER)
Cre06g1384 914 Pfam AAA domain 624 830 IPR041679 -
Cre06g1384 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 843 IPR027417 -
Cre06g1384 914 CDD SF1_C_Upf1 654 846 IPR047187 -
Cre06g1384 914 MobiDBLite consensus disorder prediction 870 884 - -
Cre06g1384 914 MobiDBLite consensus disorder prediction 855 914 - -
Cre06g1384 914 Gene3D - 652 856 IPR027417 -
Cre06g1384 914 MobiDBLite consensus disorder prediction 206 229 - -
Cre06g1384 914 Pfam AAA domain 542 616 IPR041677 GO:0004386(InterPro)
Cre06g1384 914 Pfam AAA domain 428 527 IPR041677 GO:0004386(InterPro)
Cre06g1384 914 FunFam Probable RNA helicase SDE3 377 522 - -
Cre06g1384 914 Pfam Helicase MOV-10, beta-barrel domain 295 380 IPR049080 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1384 K18422 - - csv:101209925 1667.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1384 Cre-Chr6:8026638 Cre10g1832 Cre-Chr10:32866972 8.30E-35 dispersed
Cre06g1384 Cre-Chr6:8026638 Cre10g0450 Cre-Chr10:3465631 5.40E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34