Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1398 ATGAGTGCCGGCACGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCGGTGCTCTCAGGAAGGTCGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCAAGTGATGATGCTCAGGTTACAATGTCAGTTGATGAATCTGCTTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGTTGAACCAGACAACTATGTCACTAGTCCCAGAGATCAATATGATACGAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGTATGTCAGTCTCCACCATGTCTTTTGCAGACTTCCAGTGACAGAGATGACTTTTTTCCTCCTAGTGCTACCATCTATCGAAATGCGCACACAGAGAAGATGGTTGAACACTCTCAGCAGCAGCAGCAGCAAGCAAAGGGAACCAGTACGCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGCAAGTTTCATTACAGAGATATCGTGAAAAGCGAAAAGACAGGGGAAGATTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCCTGGAGGGATATATGAACCATCCAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCTCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTAAAAGATATCCAGGAGTCCTGA 1014 46.06 MSAGTATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRVNSNQGDSPKEPSDDAQVTMSVDESAYSNVETAKSTPEDPPVEPDNYVTSPRDQYDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHPLGGTAVCQSPPCLLQTSSDRDDFFPPSATIYRNAHTEKMVEHSQQQQQQAKGTSTRDSDVEGQASRQVSLQRYREKRKDRGRLKNKKNTGLSSSSLEGYMNHPMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKDIQES 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8171412 8176046 + CrPI670011_06g013980.1 Cre06g1398 500860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1398 337 Pfam Jas motif 246 262 IPR018467 -
Cre06g1398 337 MobiDBLite consensus disorder prediction 109 137 - -
Cre06g1398 337 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cre06g1398 337 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 262 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Cre06g1398 337 Pfam tify domain 144 172 IPR010399 -
Cre06g1398 337 MobiDBLite consensus disorder prediction 219 283 - -
Cre06g1398 337 MobiDBLite consensus disorder prediction 222 251 - -
Cre06g1398 337 SMART tify_2 138 173 IPR010399 -
Cre06g1398 337 MobiDBLite consensus disorder prediction 269 283 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53869 PF06200 tify 3.00E-15 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1398 - - - 0.0