Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1409 ATGGAGCCCGGTGGTCCGCCCACCCCTCCGCCGCTCCCTCCGCCGCCTACTGGTGCCACTCTCCTTGGCAAGTACCAATTGGGCCGTTTCCTCGGCCGTGGAAGCTTCGCTAAGGTGTATCAGGCCCGTTCTCTCGCCGATAACTCCATTGTCGCCGTCAAAATCATCGACAAGAACAAAACCATCGACGCCGCTATGGAGCCCTGCATTGTCCGTGAGATCGCCGTGATGCGACGCCTTCAGCACCATCCGAACATCCTCAAAATCCATGAAGTTATGGCGACGAAGACGAAGATCTACCTCGTTGTCGATTACGCCTCCGGAGGTGAACTATTCGCGAAACTCCTCCGCCGTGGTCGGCTGACGGAATCCACCGCTCGCCGCTACTTTCAACAATTAGTCTCTGCTCTCCATTTCTGTCACCAAAACGGCGTCGCTCATCGCGACATTAAACCCCAAAATCTCCTCCTCGATGAAGACGGTAACCTGAAGGTCTCCGACTTCGGTCTCTCCGCCTTACCAGAACAGATCAAAGACGGAATGCTTCACACCGCCTGTGGAACTCCGGCGTATACCGCGCCAGAGGTTGTTTCCCGGCGAGGCTACGACGGCGCAAAAGCCGATGCGTGGTCCTGTGGCGTTATCCTCTTCGTTTTACTCTCCGGCCATCTTCCATTCAGCGATAACAACCTCGTCGCTATGTACAAGAAGGTTTATCGCCGGGAATATCAATTTCCCGATTCAATTTCAAAGCCAGCGAGACATTTGATCTTCCAATTACTCGATCCAAATCCAAATACAAGGATGAGCATCGAGGCGTTAATGCAACATTCATGGTACAAGAAGTCACTGCGATCGAAGCCCCAAATTAGCAACAGGAGCTTATTTGAATCATTAGGTAATTACAAATCTGATTTGGGTGTTTCTGGATTAAATGCATTTGATATAATTTCAATGTCTTCTGGTTTGGATCTGTCTGGATTGTTTGAGACGACGGATTGTAATAAGAAGAGATTCACAACAGGAGTTAGTATGGAGAAAGTGGAAGAAAGGGTAACAGAGATTGGAGGAGAATTGGGTTATAGAGTGGAGAAAGGGAAAAGTGGGGCAATTGGGTTAGGGAAAGGGAGAATGATTTTGGTGGTGGAAGCTTTGGAAATAACTTCAAATCTGTTAATGGTGGAAGTGAAGGTAGCTGAATCCAAGATGGAGTTTGAGAGGATGCATTGGGGTGATTTGAAAGCAAAATTGCAGGATATTGTTGATTCTTGGCATACAAATGAAGCAATGTGA 1293 48.57 MEPGGPPTPPPLPPPPTGATLLGKYQLGRFLGRGSFAKVYQARSLADNSIVAVKIIDKNKTIDAAMEPCIVREIAVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSLRSKPQISNRSLFESLGNYKSDLGVSGLNAFDIISMSSGLDLSGLFETTDCNKKRFTTGVSMEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEALEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVDSWHTNEAM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8345290 8346582 + CrPI670011_06g014090.1 Cre06g1409 500871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1409 430 SMART serkin_6 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1409 430 Pfam NAF domain 311 365 IPR004041 GO:0007165(InterPro)
Cre06g1409 430 FunFam Non-specific serine/threonine protein kinase 16 304 - -
Cre06g1409 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 401 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre06g1409 430 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1409 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1409 430 Gene3D Kinase associated domain 1, KA1 308 422 - -
Cre06g1409 430 FunFam Non-specific serine/threonine protein kinase 18 110 - -
Cre06g1409 430 CDD CIPK_C 312 414 - -
Cre06g1409 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1409 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Cre06g1409 430 SUPERFAMILY Protein kinase-like (PK-like) 22 289 IPR011009 -
Cre06g1409 430 Gene3D Transferase(Phosphotransferase) domain 1 17 307 - -
Cre06g1409 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1409 Cre-Chr6:8345290 Cre06g2099 Cre-Chr6:28784355 2.70E-100 dispersed
Cre05g0579 Cre-Chr5:5119762 Cre06g1409 Cre-Chr6:8345290 3.40E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64207 PF00069 Pkinase 3.00E-73 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1409 K12761 - csv:101215156 817.764