Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1415 ATGGCTCGGGACGGGCATGTAGTGCCAGTGGATCCACAGACGGTGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCCACGATTTTAGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTTGAGGAGCTGCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGCCAACATGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTTGCTTTGGAAGCCATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCTAATTGGTTTCCTGCCTCTCCTACAATTGGTTCAAAAATCTCAAGAGCAAGCAGAGCAAGTGTTGCAACTGTACGAGGGGATGAGGATGATATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGAACATTGAACAAATTAACTACACTGCGAGAATATATTGACGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGACGATCACGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGCGCGGTGTTGTTTGTCACAATTATTTACTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA 1161 44.1 MARDGHVVPVDPQTVLTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGQHDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACAVLFVTIIYYARYKGLVGS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8444609 8449057 + CrPI670011_06g014150.1 Cre06g1415 500877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1415 386 Gene3D - 14 99 - -
Cre06g1415 386 FunFam Magnesium transporter MRS2-1 16 99 - -
Cre06g1415 386 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 383 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cre06g1415 386 Pfam Magnesium transporter MRS2-like 40 229 - -
Cre06g1415 386 Pfam Magnesium transporter MRS2-like 266 313 - -
Cre06g1415 386 CDD Mrs2_Mfm1p-like 28 383 IPR039204 -
Cre06g1415 386 Coils Coil 187 214 - -
Cre06g1415 386 Gene3D Magnesium transport protein CorA, transmembrane region 104 316 - -
Cre06g1415 386 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 322 374 IPR045863 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1415 K16075 - - csv:101203841 688.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1415 Cre-Chr6:8444609 Cre08g0982 Cre-Chr8:22943810 1.20E-64 dispersed
Cre02g1047 Cre-Chr2:8353547 Cre06g1415 Cre-Chr6:8444609 7.30E-78 transposed
Cre05g1128 Cre-Chr5:10719974 Cre06g1415 Cre-Chr6:8444609 2.40E-82 transposed
Cre10g1438 Cre-Chr10:28110223 Cre06g1415 Cre-Chr6:8444609 8.50E-87 transposed
Cre06g1415 Cre-Chr6:8444609 Cre07g0431 Cre-Chr7:1999281 9.30E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1438 . 82 486 MRS2 Gene Family AT1G16010 86.4 8.3e-190 660.2
Cre08g0982 . 150 506 MRS2 Gene Family AT1G16010 52.0 1.0e-99 360.9
Cre06g1415 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.8e-156 549.3
Cre07g0431 . 708 1080 MRS2 Gene Family AT5G64560 68.5 4.4e-131 464.9
Cre02g1047 . 14 495 MRS2 Gene Family AT3G19640 64.4 1.1e-155 547.0
Cre05g1128 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.8e-136 481.1
Cre02g0369 . 59 416 MRS2 Gene Family AT3G58970 71.5 9.2e-133 470.7
Cre08g0982 . 144 506 MRS2 Gene Family AT2G03620 67.5 1.7e-128 456.4
Cre10g1438 . 79 486 MRS2 Gene Family AT2G03620 54.9 2.5e-111 399.4
Cre06g1415 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.1e-127 453.4
Cre07g0431 . 708 1042 MRS2 Gene Family AT5G09690 63.4 5.8e-108 387.9
Cre10g1438 . 83 422 MRS2 Gene Family AT5G09690 50.6 8.1e-78 287.7
Cre06g1415 . 23 281 MRS2 Gene Family AT5G09720 69.1 8.0e-88 320.9
Cre07g0431 . 744 1002 MRS2 Gene Family AT5G09720 61.3 1.2e-75 280.4
Cre10g1438 . 82 486 MRS2 Gene Family AT1G80900 84.7 3.1e-184 641.7
Cre08g0982 . 151 506 MRS2 Gene Family AT1G80900 54.3 8.8e-99 357.8
Cre01g1187 . 16 436 MRS2 Gene Family AT5G22830 68.6 5.7e-149 524.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58