Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1415 ATGGCTCGGGACGGGCATGTAGTGCCAGTGGATCCACAGACGGTGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCCACGATTTTAGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTTGAGGAGCTGCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGCCAACATGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTTGCTTTGGAAGCCATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCTAATTGGTTTCCTGCCTCTCCTACAATTGGTTCAAAAATCTCAAGAGCAAGCAGAGCAAGTGTTGCAACTGTACGAGGGGATGAGGATGATATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGAACATTGAACAAATTAACTACACTGCGAGAATATATTGACGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGACGATCACGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGCGCGGTGTTGTTTGTCACAATTATTTACTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA 1161 44.1 MARDGHVVPVDPQTVLTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGQHDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACAVLFVTIIYYARYKGLVGS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8444609 8449057 + CrPI670011_06g014150.1 Cre06g1415 500877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1415 386 Gene3D - 14 99 - -
Cre06g1415 386 FunFam Magnesium transporter MRS2-1 16 99 - -
Cre06g1415 386 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 383 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cre06g1415 386 Pfam Magnesium transporter MRS2-like 40 229 - -
Cre06g1415 386 Pfam Magnesium transporter MRS2-like 266 313 - -
Cre06g1415 386 CDD Mrs2_Mfm1p-like 28 383 IPR039204 -
Cre06g1415 386 Coils Coil 187 214 - -
Cre06g1415 386 Gene3D Magnesium transport protein CorA, transmembrane region 104 316 - -
Cre06g1415 386 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 322 374 IPR045863 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1415 Cre-Chr6:8444609 Cre08g0982 Cre-Chr8:22943810 1.20E-64 dispersed
Cre02g1047 Cre-Chr2:8353547 Cre06g1415 Cre-Chr6:8444609 7.30E-78 transposed
Cre05g1128 Cre-Chr5:10719974 Cre06g1415 Cre-Chr6:8444609 2.40E-82 transposed
Cre10g1438 Cre-Chr10:28110223 Cre06g1415 Cre-Chr6:8444609 8.50E-87 transposed
Cre06g1415 Cre-Chr6:8444609 Cre07g0431 Cre-Chr7:1999281 9.30E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1415 K16075 - csv:101203841 688.337