Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1437 ATGCAACTTTTTAAATCCACGATTATTACGAGTCGGTTGGGCTTTCCGGCCACCGGCCCAATATCAACCACCGTTGACGGCAGTGGAAGAGATCATGACGACGACGAAGACGAGCCAAACGGAGGCGGCGTGGTGGTCGGAAACCGCCGATCGAGAGGACGGCCACCGGGATCGAAAAACAAACCAAAATCTCCAATCATCGTCACGCGCGACAACCCTCACGCGCTTCGCACGCACGTGATCGAGATCGTCGGAGGAGCCGACGTCGCCGGCAGCATAAAGCAATTCTCCTGCCGCCGACAACGTGGGGTTTGTGTTCTCAGTGGCAGCGGTACGGTTGTGGACGTAACTCTCCGGCAATCCGCCGGTTCTGCCGCCGTGATCCAACTTCACGGCCGGTTCGATATTCTATCTCTAAGTGGGTCTTTTCTTCCCGGTCGAGCCCCTCCCTGTTCGACCGGGCTGACCGTGTACTTGTCGGGCGGTGAGGGGCAGGTGATTGGAGGGACGGTGGTGGGCCCATTGTTGGCAGCTGGGCCTATAATTTTGATAGCTGCTACTTTTGCTAGTGCTACTTATGAGAGATTGCCTTTACAAGACGACCATAATAATCAAGAAAGAGAGATTTCTCCGGCCACCACGGGCGGCGGAGAAGTGGAGGAGCCGCCGCAGTTTACTCGGATGGCAACTTCAATTTACGACTTGATGTCACCAAATAATCATGATGGAGTTGATGGGTATGGTTGGGCTCATGAGAGACCATCTTTTGTTTAA 774 54.39 MQLFKSTIITSRLGFPATGPISTTVDGSGRDHDDDEDEPNGGGVVVGNRRSRGRPPGSKNKPKSPIIVTRDNPHALRTHVIEIVGGADVAGSIKQFSCRRQRGVCVLSGSGTVVDVTLRQSAGSAAVIQLHGRFDILSLSGSFLPGRAPPCSTGLTVYLSGGEGQVIGGTVVGPLLAAGPIILIAATFASATYERLPLQDDHNNQEREISPATTGGGEVEEPPQFTRMATSIYDLMSPNNHDGVDGYGWAHERPSFV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8708872 8710063 - CrPI670011_06g014370.1 Cre06g1437 500899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1437 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 77 188 IPR005175 -
Cre06g1437 257 Gene3D - 76 207 - -
Cre06g1437 257 MobiDBLite consensus disorder prediction 15 67 - -
Cre06g1437 257 ProSiteProfiles PPC domain profile profile. 73 212 IPR005175 -
Cre06g1437 257 FunFam AT-hook motif nuclear-localized protein 76 204 - -
Cre06g1437 257 MobiDBLite consensus disorder prediction 198 222 - -
Cre06g1437 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 211 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre06g1437 257 CDD DUF296 77 188 IPR005175 -
Cre06g1437 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1437 Cre-Chr6:8708872 Cre09g2174 Cre-Chr9:40811400 4.80E-57 dispersed
Cre02g2008 Cre-Chr2:33535797 Cre06g1437 Cre-Chr6:8708872 5.40E-60 wgd
Cre05g0548 Cre-Chr5:4844801 Cre06g1437 Cre-Chr6:8708872 1.60E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1437 - - - 0.0